PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000877.1_g610.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 286aa    MW: 31939.1 Da    PI: 6.0699
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000877.1_g610.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-099352048
                               TTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqkyl 48
                               G + W++Ia++++  Rt++++k++w+++l
  Pav_sc0000877.1_g610.1.mk  9 GCR-WAAIASYLP-QRTDNDIKNYWNTHL 35
                               555.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    
MMKFIFFNGC RWAAIASYLP QRTDNDIKNY WNTHLKKKLR KLQTGLDGHD HHNSQDGFSG  60
NSHDQPISKG QWERRLQTDI HMAKQALCEA LSLDKPPTHD LHLQDLKPSI NLGYNNNDQP  120
NTNTCSRPHQ ASTYASNTEN IAKLLESWMK NSPKGPSSAQ NHNQTNSKTN LPQINSFKNN  180
NNTAAGCSMS TSSEGAQSAT TTPEQAFDSL FSFNSSTSDV SQSMSVDENN ANFTAETSCL  240
FQDESKPNLE GEVPLTLLEK WLFDDAAPHA HEDLINMSLE NTSVMF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-45MYB family protein