PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000877.1_g280.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 389aa MW: 41580 Da PI: 9.6556

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000877.1_g280.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	133.6	1.8e-41	62	171	2	92
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasn 84 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ Pav_sc0000877.1_g280.1.mk 62 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSS 145 789******************************************************************999877777777776 PP TCP 85 sssg..................kaak 92 s + +++ Pav_sc0000877.1_g280.1.mk 146 MSVPsqlrssyyspnfsvhqnqRRSL 171 66664444445555555555542222 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MSNVGCGADH ISCGTQQRIQ SISSWHFKFE ILARQQVQPR AQCSTGYSFF KGFKSEPSKK 60 PPPKRTSTKD RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPAVI 120 AATGTGTIPA NFTSLNISLR SSGSSMSVPS QLRSSYYSPN FSVHQNQRRS LFQGIGLSSS 180 DNSSTLLNFQ TNSMHASMLQ AKQELRDTVS LDLSETASGE GSMGGRKRRP PEQDLNQMGG 240 GGGGGGGGYL LQSSTGAVPA SHHHSQIPAN FWMVANSNNQ VMSGDPIWTF PASVNNSGLY 300 RGTMSGGLHF MNFPAPMTLL PSQQQLGGSG GGGGGNDGDN MSDGQLNMLA GLNPYRHMSS 360 TGVSESQQAS GSHSHHGGDD RHDSTSHHS

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MSNVGCGADH ISCGTQQRIQ SISSWHFKFE ILARQQVQPR AQCSTGYSFF KGFKSEPSKK  60
PPPKRTSTKD RHTKVDGRGR RIRMPALCAA RVFQLTRELG HKSDGETIEW LLQQAEPAVI  120
AATGTGTIPA NFTSLNISLR SSGSSMSVPS QLRSSYYSPN FSVHQNQRRS LFQGIGLSSS  180
DNSSTLLNFQ TNSMHASMLQ AKQELRDTVS LDLSETASGE GSMGGRKRRP PEQDLNQMGG  240
GGGGGGGGYL LQSSTGAVPA SHHHSQIPAN FWMVANSNNQ VMSGDPIWTF PASVNNSGLY  300
RGTMSGGLHF MNFPAPMTLL PSQQQLGGSG GGGGGNDGDN MSDGQLNMLA GLNPYRHMSS  360
TGVSESQQAS GSHSHHGGDD RHDSTSHHS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	8e-42	TCP family protein