PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000877.1_g1660.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 539aa MW: 59819.9 Da PI: 8.4052

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000877.1_g1660.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	370	392	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H Pav_sc0000877.1_g1660.1.mk 370 FECTTCNKVFRSYQALGGHRASH 392 89**********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MELEDQQFKH LCKFCGKSFP CGRSLGGHMR SHLTNNSVET EERLIIGKVK LPSANNVNSD 60 FETGPHHQPG YGLRENPKKT WRLADSSEDT SLLPVKFCRE CGKGFQSWNA LFGHMKCHSE 120 KERVVNSINS FDEEEEEDSW TCANQKLVMD SQSDNETTTP NRRRRSRRRR TRYMGTTTSS 180 SNFSIANAAT SSVSEIEQEQ EEVALCLMML KRDAGHWGGL KFVAHDSSDN SSVFSEAPSS 240 GRTNRVNADI KGKVSVCSGI EILKLKKKLN KKTLELGNLD SDFSKHGSRM KKEELSAVGF 300 SENDKLVKKM ELAQPQLGSN NKCNSSKRKF QEGYDFESRS EQSLKTLSTT RGDVLDSEAV 360 CKSSQQRSKF ECTTCNKVFR SYQALGGHRA SHKKIKGCFA SKVESSENTI ETDHSPEPTS 420 DSKLSKSCNN ENPIEHDVKA EISTKSKGHA CTICLKVFSS GQALGGHKRS HLIGGSAENK 480 NSQTIVIQKP AAPEVRDFLD LNLPAPVEEE SSSSHAAAFK PWWVGSSHKH EALVGLISN

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MELEDQQFKH LCKFCGKSFP CGRSLGGHMR SHLTNNSVET EERLIIGKVK LPSANNVNSD  60
FETGPHHQPG YGLRENPKKT WRLADSSEDT SLLPVKFCRE CGKGFQSWNA LFGHMKCHSE  120
KERVVNSINS FDEEEEEDSW TCANQKLVMD SQSDNETTTP NRRRRSRRRR TRYMGTTTSS  180
SNFSIANAAT SSVSEIEQEQ EEVALCLMML KRDAGHWGGL KFVAHDSSDN SSVFSEAPSS  240
GRTNRVNADI KGKVSVCSGI EILKLKKKLN KKTLELGNLD SDFSKHGSRM KKEELSAVGF  300
SENDKLVKKM ELAQPQLGSN NKCNSSKRKF QEGYDFESRS EQSLKTLSTT RGDVLDSEAV  360
CKSSQQRSKF ECTTCNKVFR SYQALGGHRA SHKKIKGCFA SKVESSENTI ETDHSPEPTS  420
DSKLSKSCNN ENPIEHDVKA EISTKSKGHA CTICLKVFSS GQALGGHKRS HLIGGSAENK  480
NSQTIVIQKP AAPEVRDFLD LNLPAPVEEE SSSSHAAAFK PWWVGSSHKH EALVGLISN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	2e-50	C2H2 family protein