PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pav_sc0000820.1_g020.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 196aa MW: 22114.5 Da PI: 9.2913 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.1 | 1.7e-21 | 19 | 62 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i +sn qvtf+kRr g++KKA+EL++LC++e+a+++fs+ +k Pav_sc0000820.1_g020.1.mk 19 KIAKSSNLQVTFCKRRSGLFKKASELCTLCGVEIAIVVFSPANK 62 58889************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MVMMKKKPSQ GRQKIPIAKI AKSSNLQVTF CKRRSGLFKK ASELCTLCGV EIAIVVFSPA 60 NKPFSFGHPH VESVLDRFLG TPKSSIDSDF TSQQAQDYMS GSSAHELNMV FTQTQNHLEA 120 EKKRGQELDE MSKAGQGSSR RCWWENPIDE MGLHELEMMK AAMKELKKNV IKQVNKISMI 180 QSCAAINSQY HSLDEW |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 6e-50 | M-type_MADS family protein |