PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000759.1_g400.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 297aa    MW: 32618.2 Da    PI: 6.789
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000759.1_g400.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.33.7e-17191225135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Pav_sc0000759.1_g400.1.mk 191 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 225
                                99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MELPEFYIGG YFDAGAADFL PEKKPAAAGD QFTIDDLLDF SNEDALVTDG GFLDAAADSS  60
AVTAVDSCNS SYDDLAELEW LSNFVEDSFS AEKDLQALQF LSMSTTKPQT PETSSSSETN  120
QNAPLFHPET PLPGKARSKR SRAAPGDWST RLLHLITPND TIKPPKTTTC KKKDGIGGNS  180
NSGSDSSGRK CLHCAAEKTP QWRTGPMGPK TLCNACGVRY KSGRLVPEYR PAASPTFVSA  240
RHSNSHRKVL ELRRQKEVHR SHQHQFLSQS SIFGVSNGGH DEYLIHHHNV NDFRRMM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.19e-66GATA family protein