PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000744.1_g360.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 409aa MW: 44754.7 Da PI: 9.3176

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000744.1_g360.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.8	2.8e-11	52	77	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Pav_sc0000744.1_g360.1.mk 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77 5799********************97 PP
2	zf-CCCH	32.4	1.6e-10	108	128	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCk+G++CkF+H++ Pav_sc0000744.1_g360.1.mk 108 KYYLKTGTCKFGATCKFHHPR 128 79*****************96 PP
3	zf-CCCH	34.9	2.6e-11	152	174	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++Ck++H++ Pav_sc0000744.1_g360.1.mk 152 ECAYYLRTGQCKFGSTCKYHHPQ 174 7********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MDFDAGIPMS RAAAPVTDAP SLSPSMTQDA MWQMNLRSSE TLDPGSYPER TGEPDCSYYI 60 RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQACISVKYY LKTGTCKFGA 120 TCKFHHPRDK AGIAGRVALN ILGYPLRPNE IECAYYLRTG QCKFGSTCKY HHPQPTNMMV 180 SLRGSPVYPT VQSPTTPGQQ SYAGGISNWS RASFIPSPRW QAPSSYAPLI VPQGVVSVPG 240 WSAYSLTPFP NSHHLFQTKV LRPSQETMMP AHGVTFSLIF LLFLATVLTT TEASLTHANG 300 SAAVAAAATD KKDKAEPLVP LVGAENFKTL LMNETRRRLR SFQICALCTC CGGAKGLCLP 360 SPCCYAINCN IPNRPFGFCS FTPKTFQKFY ILSVVGRRGA ISRLVFANL

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MDFDAGIPMS RAAAPVTDAP SLSPSMTQDA MWQMNLRSSE TLDPGSYPER TGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQACISVKYY LKTGTCKFGA  120
TCKFHHPRDK AGIAGRVALN ILGYPLRPNE IECAYYLRTG QCKFGSTCKY HHPQPTNMMV  180
SLRGSPVYPT VQSPTTPGQQ SYAGGISNWS RASFIPSPRW QAPSSYAPLI VPQGVVSVPG  240
WSAYSLTPFP NSHHLFQTKV LRPSQETMMP AHGVTFSLIF LLFLATVLTT TEASLTHANG  300
SAAVAAAATD KKDKAEPLVP LVGAENFKTL LMNETRRRLR SFQICALCTC CGGAKGLCLP  360
SPCCYAINCN IPNRPFGFCS FTPKTFQKFY ILSVVGRRGA ISRLVFANL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-114	C3H family protein