PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000700.1_g1510.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GeBP

Protein Properties

Length: 368aa MW: 42224.6 Da PI: 5.0641

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000700.1_g1510.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	88.8	6.7e-28	111	211	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkeps 79 +r+ws+eDe+ lL+ l+d ++g+ ++d+ fye vk +++++ ++ q+veK+rrLKkK+++ v+k ++gke++ Pav_sc0000700.1_g1510.1.mk 111 RKRVWSKEDELELLRSLLDDYYSRGQirTTVKDTASFYEEVKPKLKLECNRAQMVEKLRRLKKKYHNVVNKmndmNSTGKEFR 193 58***************9999999877888********************************9998887789* PP DUF573 80 fskehdqkifelskkiWg 97 f+++hd+ +fels kiW+ Pav_sc0000700.1_g1510.1.mk 194 FKNPHDKVVFELSDKIWN 211 ***************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MAWPPLLSWI LSSSSSSSSS SEYESDNNDV EDLGGINDVP DNNPKSQNDN IDDHENDDVS 60 YEPQEEDQNS NSTSDYTFTV SEPSAKRRRI DRTYEPALTS EAPEENKKRR RKRVWSKEDE 120 LELLRSLLDD YYSRGQIRTT VKDTASFYEE VKPKLKLECN RAQMVEKLRR LKKKYHNVVN 180 KMNDMNSTGK EFRFKNPHDK VVFELSDKIW NVVDSHEDYA PISKYVSICN NVKVKKEEDN 240 VGSSSVADHE RPQMRHTWSH SRLTTTYDEN NKACDVLNDN GTTSLLNINN NNNVDDNMKN 300 DIPGLIIGGL AMNPLPLSLS KFGSGVEVAD EKWRKQQILE LEAYSKRLDL VQHQVKAALD 360 ELRSKGVE

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MAWPPLLSWI LSSSSSSSSS SEYESDNNDV EDLGGINDVP DNNPKSQNDN IDDHENDDVS  60
YEPQEEDQNS NSTSDYTFTV SEPSAKRRRI DRTYEPALTS EAPEENKKRR RKRVWSKEDE  120
LELLRSLLDD YYSRGQIRTT VKDTASFYEE VKPKLKLECN RAQMVEKLRR LKKKYHNVVN  180
KMNDMNSTGK EFRFKNPHDK VVFELSDKIW NVVDSHEDYA PISKYVSICN NVKVKKEEDN  240
VGSSSVADHE RPQMRHTWSH SRLTTTYDEN NKACDVLNDN GTTSLLNINN NNNVDDNMKN  300
DIPGLIIGGL AMNPLPLSLS KFGSGVEVAD EKWRKQQILE LEAYSKRLDL VQHQVKAALD  360
ELRSKGVE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	90	KRRRI
2	86	112	KRRRIDRTYEPALTSEAPEENKKRRRK
3	106	113	NKKRRRKR
4	107	112	KKRRRK
5	107	113	KKRRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	8e-21	GeBP family protein