PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000675.1_g1210.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 606aa    MW: 66629 Da    PI: 6.1021
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000675.1_g1210.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.4e-21124179156
                                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  Pav_sc0000675.1_g1210.1.mk 124 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 179
                                 688999***********************************************999 PP
2START207.64.9e-653315551206
                                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWde 74 
                                 ela++a++elvk+a+ +ep+W +s     e +n +e++++f++  +     + +ea+r++g+v+ ++  lve+l++++ +W e
  Pav_sc0000675.1_g1210.1.mk 331 ELALAAMDELVKLAQTDEPLWLRSLeggrEVLNHEEYMRSFTPCIGlkpngFVTEASRETGMVIINSLALVETLMESN-RWLE 412
                                 5899************************99***********9999899999***************************.**** PP

                                 T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-E CS
                       START  75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRae 146
                                 +++    + +t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvSvd  ++ +  + ++ ++
  Pav_sc0000675.1_g1210.1.mk 413 MFPclvaRTSTTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDTIRDTSGAPTFMNCR 495
                                 ************************************************************************999******** PP

                                 ESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                       START 147 llpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                 +lpSg+++++++ng+skvtwveh++++++++h+l+r++++sg+ +ga++wvatlqrqce+
  Pav_sc0000675.1_g1210.1.mk 496 RLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHQLYRPMLSSGMGFGAQRWVATLQRQCEC 555
                                 **********************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    
MSFGGFLDNS TGSGGGARIV ADISYNNTSS STHSNNMPSS ALAQPRLVTQ SLTKSMFNSP  60
GLSLALQTNA DGQGDVTRMA ENFETNVGRR SREEEHESRS GSDNMDGGSG DDQDAADNTN  120
PRKKKRYHRH TPQQIQELEA LFKECPHPDE KQRLELSRRL CLETRQVKFW FQNRRTQMKT  180
QLERHENSLL RQENDKLRAE NMSIRDAMRN PICSNCGGPA IIGEISLEEQ HLRIENARLK  240
DELDRVCALA GKFLGRPISS LATSMGPPLP SSTLELGVGS NGFGGLSSVA TSMPVGPDFG  300
GGIGSAMSVV PHSRPSVTGL DRSMERSMFL ELALAAMDEL VKLAQTDEPL WLRSLEGGRE  360
VLNHEEYMRS FTPCIGLKPN GFVTEASRET GMVIINSLAL VETLMESNRW LEMFPCLVAR  420
TSTTDVISSG MGGTRNGALQ LMHAELQVLS PLVPVREVNF LRFCKQHAEG VWAVVDVSVD  480
TIRDTSGAPT FMNCRRLPSG CVVQDMPNGY SKVTWVEHAE YDESQVHQLY RPMLSSGMGF  540
GAQRWVATLQ RQCECLAILM SSSVPSRDHT DPGEQPALSQ ADGRVGGDRQ QPHLVHSPED  600
QGRPTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.20.0HD-ZIP family protein