PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000652.1_g730.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 296aa MW: 33117.1 Da PI: 10.4431

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000652.1_g730.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.5e-13	171	216	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av YI++L Pav_sc0000652.1_g730.1.mk 171 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVVYINKL 216 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence
MSSCSPNFGQ DNSATLQQRL QFIVQNRPEW WVYSIFWQAS KDSSGQVALS WAGGHFRSSR 60 DLASKRSNKL VHNYQPKSGF ISTERKKSSR EGPVLVPLLE SGMFSAGPQK EWTTQGGTKE 120 RFALNIGGSS SDSGPSDSVG NFTTENAENN GRLKKRGRSS NHGTDRESPI NHVEAERQRR 180 EKLNHRFYAL RSVVPNVSKM DKASLLSDAV VYINKLKAKV EELEAKIQQQ QPQKPKLGIL 240 SNLEHQSNQS ASSIVDHHLY HASISSVKEM MLQDVVARVP HGFPSEETMR TAIIKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	159	LKKRGRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	3e-25	bHLH family protein