PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000624.1_g060.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 188aa    MW: 21336.4 Da    PI: 8.5817
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000624.1_g060.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.73.5e-1264922856
                               HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56
                               +++  LA++l+L+ rqV vWFqNrRa+ k
  Pav_sc0000624.1_g060.1.mk 64 ARKLSLAEQLNLKPRQVEVWFQNRRARTK 92
                               56678**********************98 PP
2HD-ZIP_I/II88.96.3e-2947126990
                HD-ZIP_I/II   9 eqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                                + v++L ++ e+++ L   rK +la++L+l+prqv+vWFqnrRARtk+kq+E+d+++ k+++++l +en+rL+ke +eL+ +
  Pav_sc0000624.1_g060.1.mk  47 QEVASLGDHMENRSSLR-ARKLSLAEQLNLKPRQVEVWFQNRRARTKLKQTEVDCDFWKKCCESLGDENRRLKKELQELK-S 126
                                56788888888888886.69***********************************************************9.4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MGGDEEACNT KLALGLGMGE YASRQEMRKK ENPLVCLDLS FALCPKQEVA SLGDHMENRS  60
SLRARKLSLA EQLNLKPRQV EVWFQNRRAR TKLKQTEVDC DFWKKCCESL GDENRRLKKE  120
LQELKSLNKN EASPLYIQIP KAAMLSMCPS CERMVEAHHH NQAAAKNTED LNVVRKSNKL  180
QGGFDGTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18795RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-42HD-ZIP family protein