PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000622.1_g610.1.br

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 378aa MW: 42259.5 Da PI: 4.4679

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000622.1_g610.1.br	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	79.3	8.6e-25	10	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknrat 78 lp+Gf+F+P+d++l+ +yL +kv+g+++ e+vi+e+d+y k+ePwd+ + + a+ +++yfF+k ++ + +++r r++ Pav_sc0000622.1_g610.1.br 10 LPVGFKFRPRDDQLLGYYLLNKVRGTSFMYENVIPEMDLYgKIEPWDIWHeygghN-LATGEDLYFFTKLKSLSDKDSRVARTI 92 79***********************99999**99568*74244422.2356689**************** PP NAM 79 ksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 sg+Wk + ++v + ++++ g+ k + + + ++ + W+mhey+l Pav_sc0000622.1_g610.1.br 93 GSGTWKGENSGTTVSDPknEENDLGIWKRFHYE--NPKSVQDGCWIMHEYSL 142 **999999999885566679999998886..566667999****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MAPSESVVNL PVGFKFRPRD DQLLGYYLLN KVRGTSFMYE NVIPEMDLYG KIEPWDIWHE 60 YGGHNLATGE DLYFFTKLKS LSDKDSRVAR TIGSGTWKGE NSGTTVSDPK NEENDLGIWK 120 RFHYENPKSV QDGCWIMHEY SLHPSLVNPK PNSTNQFVLC RIRKNDKGKR KLRTAEEDNE 180 TDTPVQSQNK RQRPQQVTSF EEFIGNCTPM SEATGVGGSV SNLPTGLTQS LPDSSFAYPR 240 TVVSSQAREN YTDDVSQFHG GGDGDALMSD FSNLDTAQPF TEQALGSYAV CNQERASDVY 300 ETQHGLGLTD NNIEHWPSPF SSEEDQVHAL DFSIDYDLLI HLINCDDGPP QSSTAQFMGM 360 GMENTTTASS EANMVIID

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MAPSESVVNL PVGFKFRPRD DQLLGYYLLN KVRGTSFMYE NVIPEMDLYG KIEPWDIWHE  60
YGGHNLATGE DLYFFTKLKS LSDKDSRVAR TIGSGTWKGE NSGTTVSDPK NEENDLGIWK  120
RFHYENPKSV QDGCWIMHEY SLHPSLVNPK PNSTNQFVLC RIRKNDKGKR KLRTAEEDNE  180
TDTPVQSQNK RQRPQQVTSF EEFIGNCTPM SEATGVGGSV SNLPTGLTQS LPDSSFAYPR  240
TVVSSQAREN YTDDVSQFHG GGDGDALMSD FSNLDTAQPF TEQALGSYAV CNQERASDVY  300
ETQHGLGLTD NNIEHWPSPF SSEEDQVHAL DFSIDYDLLI HLINCDDGPP QSSTAQFMGM  360
GMENTTTASS EANMVIID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08790.1	2e-18	NAC family protein