PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000583.1_g170.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 215aa    MW: 24175.2 Da    PI: 6.5624
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000583.1_g170.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.000243456123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C  C++ F++   L  H++ H
  Pav_sc0000583.1_g170.1.mk 34 YECVFCKRGFTTAQALGGHMNIH 56
                               99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MEHHDHQDSK SSSTDEEADQ RSDANNGVGT GRSYECVFCK RGFTTAQALG GHMNIHRRER  60
APKTRPSSAP NLSSSISKSV DDHNHPGLRS YREIQSYPPH YSTAPDQDQV VVDHHVNYRT  120
FMPAPTGSWV VRPSPHANYV SEEDLCARNY IPRHRNLLTD DHRDWRSGSS LSLGIGRPSH  180
DLDNNKDRVA NGAGSDEELD LELRLGHDPL YNIKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.12e-13C2H2 family protein