PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G43540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 137aa MW: 15347.2 Da PI: 8.9972 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.3e-05 | 35 | 57 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H AT5G43540.1 35 YECTFCKRGFTNAQALGGHMNIH 57 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.2E-5 | 18 | 60 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.64E-7 | 32 | 62 | No hit | No description |
SMART | SM00355 | 0.0097 | 35 | 57 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.136 | 35 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 37 | 57 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MECERSSSST SSETGAVRHR RTSSSSVSTV TRRMYECTFC KRGFTNAQAL GGHMNIHRRD 60 RLNKAKVQND ADVALSQTHR CFHVASDLGG YEQVDSVVLR TTTSNYIQHL RIGSMATRRE 120 NVVVEGNEID LELRLGL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18422342 | 0.0 | ||||
Expression Atlas | AT5G43540 | - | ||||
AtGenExpress | AT5G43540 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G43540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G43540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016875 | 0.0 | AB016875.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K9D7. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_199167.1 | 1e-96 | C2H2 and C2HC zinc fingers superfamily protein | ||||
TrEMBL | Q9FIY6 | 3e-95 | Q9FIY6_ARATH; C2H2 and C2HC zinc fingers superfamily protein | ||||
STRING | AT5G43540.1 | 4e-96 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9168 | 24 | 35 | Representative plant | OGRP1998 | 11 | 33 |
Link Out ? help Back to Top | |
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Phytozome | AT5G43540.1 |
Entrez Gene | 834374 |
iHOP | AT5G43540 |
wikigenes | AT5G43540 |
Publications ? help Back to Top | |||
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