PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pav_sc0000555.1_g160.1.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 268aa MW: 28608.9 Da PI: 10.2701 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 123.4 | 2.5e-38 | 28 | 114 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasn 84 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++ +as+ a+ss+s+++ Pav_sc0000555.1_g160.1.mk 28 APKRSSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTVPASALaAAGSSVSEQG- 110 789*************************************************************9999988844444444433. PP TCP 85 sssg 88 ss + Pav_sc0000555.1_g160.1.mk 111 SSVS 114 3333 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 268 aa Download sequence |
MAENKPAQIK DLQILKANKD DENKKHLAPK RSSNKDRHKK VDGRGRRIRM PALCAARVFQ 60 LTRELGHKSD GETIQWLLQQ AEPSIIAATG SGTVPASALA AAGSSVSEQG SSVSSVSSGL 120 HTRMEGLIRP SVGSEGSANW AFHMGRSNVA SGVWPLPFLS GVRSGFDQNS GQATVNFGSE 180 NLNIMQHKFG FHGFDVPGMN LGSMGFPTIL SGSNQQVPGL ELGLSQDGHI GVVSSQALTQ 240 FHQNKGQRPG SVASFNQQQQ QQPSDTNE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27010.1 | 7e-60 | TCP family protein |