PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000484.1_g580.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 238aa    MW: 26906.6 Da    PI: 4.3247
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000484.1_g580.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.58e-171663149
                        NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                               lppGfrFhPtdeel+++yL +kv ++ + + ++i evd++k+ePwdLp 
  Pav_sc0000484.1_g580.1.mk 16 LPPGFRFHPTDEELISHYLSPKVLDSCFCA-RAIGEVDLNKCEPWDLPW 63
                               79************************9888.89**************93 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MENASGFSKE DEQMELPPGF RFHPTDEELI SHYLSPKVLD SCFCARAIGE VDLNKCEPWD  60
LPWLVRLGSF GNELRPSLLP PLMDSSPYNS DTRTTVCETS HVSCFSDPME DQRTQEDIID  120
SFQNNNHHNS SNSNHNPLLA SSSRSNPSAH LNPFYSNQIT PNIGFLQHQD SVLMQDQSFL  180
RMLLENQAPN LRRSAKTELS QDTGLSMDVS SVVSNREMVQ DDPSYSSAPV EFDSLWNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-32NAC family protein