PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000359.1_g460.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

AP2

Protein Properties

Length: 483aa MW: 52781.7 Da PI: 9.2812

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000359.1_g460.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.8	9.7e-12	174	230	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Pav_sc0000359.1_g460.1.mk 174 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 230 57*****************5444.2455536655.779999************98 PP
2	AP2	22.2	3.6e-07	273	305	1	36
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 s y+GV+++++ grW A+I + +k +lg+f Pav_sc0000359.1_g460.1.mk 273 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTF 305 57**************988532...5*****9 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MDSSPQNWLL GFSLSNHSHH RHPSHDLSLF EAFTSSPSHT SAHQQQDHSN PGGATPSSPT 60 DLSIFSSGVG GPKLEDFLGG STATPPSLAH FSGTTAAADQ PHNHQQTAPL ALSENEIYDS 120 ELKTIAASFL RGFSTPATAA ATSVQTIKPQ NLVPLASSEL TPKKTPDTFG QRTSIYRGVT 180 RHRWTGRYEA HLWDNSCRRE GQSRKGRQGG YDKEEKAARA YDLAALKYWG PTTTTNFPVS 240 SYEKELNEMK NMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL 300 YLGTFRNRSA DDRDLSSASS VTFASQQTSS STLSFAIPIK QDPSTDYWSN IFGYHHNAKN 360 PSTVSVAPSS LFQSCTTNVP YGNNSSQIPF SMDFSVSATS STSPSETNNG YFVNYNAHGQ 420 QKQQQDQSTS GTNSIPFATP IALNSNNGFE TSSGYGSWIG PSLHTFQTHA KTNLFQTPIF 480 GME

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MDSSPQNWLL GFSLSNHSHH RHPSHDLSLF EAFTSSPSHT SAHQQQDHSN PGGATPSSPT  60
DLSIFSSGVG GPKLEDFLGG STATPPSLAH FSGTTAAADQ PHNHQQTAPL ALSENEIYDS  120
ELKTIAASFL RGFSTPATAA ATSVQTIKPQ NLVPLASSEL TPKKTPDTFG QRTSIYRGVT  180
RHRWTGRYEA HLWDNSCRRE GQSRKGRQGG YDKEEKAARA YDLAALKYWG PTTTTNFPVS  240
SYEKELNEMK NMTRQEFVAS LRRKSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL  300
YLGTFRNRSA DDRDLSSASS VTFASQQTSS STLSFAIPIK QDPSTDYWSN IFGYHHNAKN  360
PSTVSVAPSS LFQSCTTNVP YGNNSSQIPF SMDFSVSATS STSPSETNNG YFVNYNAHGQ  420
QKQQQDQSTS GTNSIPFATP IALNSNNGFE TSSGYGSWIG PSLHTFQTHA KTNLFQTPIF  480
GME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-114	AP2 family protein