PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000358.1_g640.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26113.6 Da    PI: 9.6875
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000358.1_g640.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.6e-30959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  Pav_sc0000358.1_g640.1.mk  9 KRIENKINRQVTFSKRRAGLLKKAQEISVLCDAEVALIVFSTKGKLFEYST 59
                               79***********************************************96 PP
2K-box106.63e-35781744100
                      K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                                ++  +++++ + s++ e+akLk+++e Lqr++ h++GedL+sLslkeLq+LeqqL+++lk+iRs+Kn++++e+i+elqkk k+l
  Pav_sc0000358.1_g640.1.mk  78 KQLLANDHESTGSWTLEHAKLKARVEVLQRNHSHFMGEDLQSLSLKELQNLEQQLDSALKHIRSRKNQVMYESISELQKKDKAL 161
                                555566778899************************************************************************ PP

                      K-box  88 qeenkaLrkklee 100
                                qe+n+ L kk++e
  Pav_sc0000358.1_g640.1.mk 162 QEQNNLLAKKVKE 174
                                **********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAQEISVLCD AEVALIVFST KGKLFEYSTD  60
SCMERILERY ERYSYSEKQL LANDHESTGS WTLEHAKLKA RVEVLQRNHS HFMGEDLQSL  120
SLKELQNLEQ QLDSALKHIR SRKNQVMYES ISELQKKDKA LQEQNNLLAK KVKEKEKALA  180
PQAHSGSNYQ GIRSDGSGGD HEDVNETPTA NRPNTLLPPW MLRHLNE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.13e-98MIKC_MADS family protein