PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000358.1_g150.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 585aa MW: 67525.7 Da PI: 4.886

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000358.1_g150.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.001	302	322	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C Cgk F++ + k+H ++ Pav_sc0000358.1_g150.1.mk 302 YCVVCGKKFKSEKQWKNHEQS 322 5*****************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MASSERRCHY EVLGLSRDCS PDEIRSAYKK LALQRHPDKL VQSGLSQAQA TAQFQELSQA 60 YEVLADPKER AWYDSHRSQI LFADPNSANS VPDSVIPNLF SFFSTTVFSG YSDSGRGFYK 120 VYADVFNKIY ANELSYVRKL GLGLDTVREA PAMGNLESPY AQVTAFYNYW LGFCTVMDFF 180 WVDQYDVMSG PNRKVRRLME EDNKKLRKKA KREYNDTVRG LAEFVKKRDK RVMDMMVKRE 240 EERERKREEE REKKKKLEKD KLERAMAYEE PEWARVVEEE EGGNGVEEME EEEEERRRKE 300 LYCVVCGKKF KSEKQWKNHE QSKKHRDKVA EFRESIGDEE FDDQEILEGE VEERGEVDDI 360 DGVDTDELGE GIREGLKIGE EENGVGVSDR EDKFYEVGDE NESEKVDEAV GLDGDDGEDE 420 MGILEAMLAG RKSRKNAALR VEQEDSFVTD IHVENDGDEV EFMENDNRKS TRRKGGARKD 480 RSKKSGGETK KVGRSEINSD RGEELNEHDN SHIEESASHS FVEKESNDKG DDQLARRKKS 540 SSQPVDKKEN VKKEANSKSK NSSKGKKTKV MLLLYNRTYD KQTIM

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MASSERRCHY EVLGLSRDCS PDEIRSAYKK LALQRHPDKL VQSGLSQAQA TAQFQELSQA  60
YEVLADPKER AWYDSHRSQI LFADPNSANS VPDSVIPNLF SFFSTTVFSG YSDSGRGFYK  120
VYADVFNKIY ANELSYVRKL GLGLDTVREA PAMGNLESPY AQVTAFYNYW LGFCTVMDFF  180
WVDQYDVMSG PNRKVRRLME EDNKKLRKKA KREYNDTVRG LAEFVKKRDK RVMDMMVKRE  240
EERERKREEE REKKKKLEKD KLERAMAYEE PEWARVVEEE EGGNGVEEME EEEEERRRKE  300
LYCVVCGKKF KSEKQWKNHE QSKKHRDKVA EFRESIGDEE FDDQEILEGE VEERGEVDDI  360
DGVDTDELGE GIREGLKIGE EENGVGVSDR EDKFYEVGDE NESEKVDEAV GLDGDDGEDE  420
MGILEAMLAG RKSRKNAALR VEQEDSFVTD IHVENDGDEV EFMENDNRKS TRRKGGARKD  480
RSKKSGGETK KVGRSEINSD RGEELNEHDN SHIEESASHS FVEKESNDKG DDQLARRKKS  540
SSQPVDKKEN VKKEANSKSK NSSKGKKTKV MLLLYNRTYD KQTIM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	230	RKVRRLMEEDNKKLRKKAKREYNDTVRGLAEFVKKRDK
2	204	212	KKLRKKAKR
3	250	256	EREKKKK
4	536	573	RKVRRLMEEDNKKLRKKAKREYNDTVRGLAEFVKKRDK
5	536	566	RRKKSSSQPVDKKENVKKEANSKSKNSSKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-155	C2H2 family protein