PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000261.1_g040.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 865aa    MW: 95791.2 Da    PI: 5.5916
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000261.1_g040.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.4e-1531121199
                                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                                ffk++       s++l lp kfa +   ++   +++ +led++g +Wev +  ++  g+  l++GW+ F  +++Lk g+f+vF 
  Pav_sc0000261.1_g040.1.mk  31 FFKIM--IGDQFSKLLFLPPKFAPTVsALV---NQKAVLEDSRGLQWEVII--SRINGSLSLKQGWNAFSLDHDLKIGEFLVFN 107
                                67777..445556679*******9996555...347***************..9999999************************ PP

                                E-SSSEE..EEEEE-S CS
                         B3  84 ldgrsefelvvkvfrk 99 
                                ++ +  f   vk+++k
  Pav_sc0000261.1_g040.1.mk 108 YITSAHF--IVKIYDK 121
                                9986666..9999997 PP
2B344.43e-143934691799
                                E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                 lp kfa +   ++   +++ +led++g +Wev +  +++ g+  l++GW+ F  +++Lk g+f+vF ++ +  f   vk+++k
  Pav_sc0000261.1_g040.1.mk 393 FLPPKFAPTVsALV---NQKAVLEDSRGLQWEVII--SRSNGSLSLKQGWNAFSLDHDLKIGEFLVFNYITSAHF--IVKIYDK 469
                                68999998885444...3479**************..99999**************************9986666..9999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    
MDGKVACVEC TQKCLLDHGN KKKASPDVGS FFKIMIGDQF SKLLFLPPKF APTVSALVNQ  60
KAVLEDSRGL QWEVIISRIN GSLSLKQGWN AFSLDHDLKI GEFLVFNYIT SAHFIVKIYD  120
KSGCEKLNFP EAVNQKKRTR DNRKYTKAGP SHTIDKSSMN KRDSRTSVVS GSDADIGHHL  180
YEMNDMGKAL IVTENASTLD NSNERSKHNP KEAYIEEMIC MFDRDVGDKQ EDDRTYIFDL  240
SDFEMLTKNA GTGGSNEVTA MDETCSHHDD ALLRLRNGAG PVDKNPVAKG AVTTAIPMDE  300
TCSDHDGSLL RLINEASSVD KSPVAKEAVT AAIPSEASKF DRSWINNSSE TEVQNTDKAM  360
KAIKIESVEL TSDPCSQKII PQINADCIIS LQFLPPKFAP TVSALVNQKA VLEDSRGLQW  420
EVIISRSNGS LSLKQGWNAF SLDHDLKIGE FLVFNYITSA HFIVKIYDKS GCEKLNFPEA  480
VNQKKRTRDN RKYTKAGPSH TIDKSSMNKR DSRTSVVSGS DADIGHHLYE MNDMGKALIV  540
TENASTLDNS NERSKHNPKE AYIEEMICMF DRDVGDKQED DRTYIFDLSD FEMLTKNAGT  600
GGSNEVTAMD ETCSHHDDAL LRLRNGAGPV DKNPVAKGAV TTAIPMDETC SDHDGSLLRL  660
INEASSVDKS PVAKEAVTAA IPSEASKFDR SWINNSSETE VQNTDKAMKA IKIESVELTS  720
DPCSQKIIPQ INGESVKVVN PVCSKISNMI RTENDCAVPV VKSEPVDPVI TLLISSSFSC  780
QELPMRLPIR MTYRGRPQTD RRVVYLRDPV MRLWPVLYIE RNYFQTLASG WEAFSKANNI  840
QPGDECVIGV ENGVEGICPV QIISK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.13e-11B3 family protein