PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000257.1_g230.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 293aa    MW: 33231.6 Da    PI: 5.532
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000257.1_g230.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1956109356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k++++++eq+++Le+ Fe ++++  e++++LA++lgL+ rqV +WFqNrRa++k
  Pav_sc0000257.1_g230.1.mk  56 KKRRLSSEQVKALERNFEVENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWK 109
                                45689************************************************9 PP
2HD-ZIP_I/II129.41.5e-4156147293
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                                kkrrls+eqvk+LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlE+dy  Lk+ yd lk + ++Le++++
  Pav_sc0000257.1_g230.1.mk  56 KKRRLSSEQVKALERNFEVENKLEPERKAKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYGILKADYDGLKLNFDSLERQNK 139
                                9*********************************************************************************** PP

                HD-ZIP_I/II  86 eLreelke 93 
                                +L+e+l++
  Pav_sc0000257.1_g230.1.mk 140 ALAEKLRH 147
                                ***99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MKRFSSSSDS LGVLVSNFPP KEEEKHGKDN YGYSKEFQAM LDSLDQEDCG EEMTGKKRRL  60
SSEQVKALER NFEVENKLEP ERKAKLAEEL GLQPRQVAIW FQNRRARWKT KQLERDYGIL  120
KADYDGLKLN FDSLERQNKA LAEKLRHLKA KLCRDSAESN GSAKEESPIS MCKSSVMEQS  180
RHQDFSDNGD NAEVNLFKNL KSKDGSSDSD SNGVMKEESN GNSSLGYNNG HSSLSSNSMV  240
NWFQLSDSRS VAGKGFQTQP VRMEEQSLFS TEESCNFFSV DQAPSLHWYS AEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15685KKRRLSSEQVKALERNFEVENKLEPERKAK
2104112RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.11e-51HD-ZIP family protein