PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000220.1_g2770.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 321aa    MW: 36030.8 Da    PI: 4.4395
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000220.1_g2770.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.3e-1984138357
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                 k++++t +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa+ k+
  Pav_sc0000220.1_g2770.1.mk  84 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKN 138
                                 56689***********************************************995 PP
2HD-ZIP_I/II127.27.2e-4184175293
                 HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                 kkrrl+ +qv++LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+k+kqlEk+y++Lk+++d+lk+++++L ke+
  Pav_sc0000220.1_g2770.1.mk  84 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKNKQLEKEYDSLKASFDKLKADHDNLLKEN 166
                                 9********************************************************************************** PP

                 HD-ZIP_I/II  85 eeLreelke 93 
                                  +L++e+++
  Pav_sc0000220.1_g2770.1.mk 167 GSLKNEIDS 175
                                 ****99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MAGGKLYSAS DMNVIFQNEK LPCSSDVLES IWVPTSSSSF HGSNSMVNFE SASGEDSLDR  60
SFFRPIDKGN GDDDYDASLN QPGKKRRLTV DQVQFLEKNF EVENKLEPER KAQLAKELGL  120
QPRQVAIWFQ NRRARFKNKQ LEKEYDSLKA SFDKLKADHD NLLKENGSLK NEIDSLKDML  180
ILKDKGKPGK GNLELHDANN IISSDVKPQS ATPNAASDNV PMVVCKQEDA SSAKSDVFDS  240
DSPHCTENHS SLLEPADSSH VFEPAEQSDF SQDEDDDLSR TLLPPPYFLK LEDSCYDEPP  300
ASSSNFVFPV EDQQPFCFWP Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RRARFKNKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-41HD-ZIP family protein