PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000220.1_g1650.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 425aa MW: 44902.7 Da PI: 7.6113

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000220.1_g1650.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.4	3.1e-39	59	155	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s Pav_sc0000220.1_g1650.1.mk 59 PPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGS 141 789******************************************************************99976666666666 PP TCP 84 nsssg........k 89 + s++ + Pav_sc0000220.1_g1650.1.mk 142 SMSAPshylrpnsS 155 44444444444330 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MIMEAENGIR SRPNFPLQFL DKNQDDDIQE APGDPGSNLN RPGSSLTQEQ QPNNGKKPPP 60 KRTSTKDRHT KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT 120 GTGTIPANFT SLNISLRSSG SSMSAPSHYL RPNSSNYFMN FNPNNLGAAA ASQLIMDENS 180 QRGRILFPGV GLLSSESSPS SSMLLNFNNA MLEAKRELRD QGGSLGDVSE GGEASAMGRK 240 RIRPEQDLLS SSSSSSSSSQ SSHHQMGISN SYMLQSASTG SIPASQSTIP ATFWMVANNP 300 SSGSGGGGHH VHEPPINPMW TIPSINNGIN SNMYRGASVS SGGGHGLHFM NFAPPPMAAI 360 LPSHMGSTPH GGGGSIADSH LGVMAALNAY RPILGGVMAE PPGGNNGQHS HHGADEGHDR 420 DSNAR

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MIMEAENGIR SRPNFPLQFL DKNQDDDIQE APGDPGSNLN RPGSSLTQEQ QPNNGKKPPP  60
KRTSTKDRHT KVDGRGRRIR MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAVIAAT  120
GTGTIPANFT SLNISLRSSG SSMSAPSHYL RPNSSNYFMN FNPNNLGAAA ASQLIMDENS  180
QRGRILFPGV GLLSSESSPS SSMLLNFNNA MLEAKRELRD QGGSLGDVSE GGEASAMGRK  240
RIRPEQDLLS SSSSSSSSSQ SSHHQMGISN SYMLQSASTG SIPASQSTIP ATFWMVANNP  300
SSGSGGGGHH VHEPPINPMW TIPSINNGIN SNMYRGASVS SGGGHGLHFM NFAPPPMAAI  360
LPSHMGSTPH GGGGSIADSH LGVMAALNAY RPILGGVMAE PPGGNNGQHS HHGADEGHDR  420
DSNAR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	3e-45	TCP family protein