PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000212.1_g1890.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 338aa    MW: 36716.2 Da    PI: 9.6545
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000212.1_g1890.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-19191224134
                        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                 Cs C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  Pav_sc0000212.1_g1890.1.mk 191 CSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 224
                                 *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MAPPSPFLEL SGDGGDHDHQ YHHLFNLEPQ TSFSSFSSSS LSSPIFLTPS QAQAPSDHYR  60
EPQNFQFQLL EADHHNIVSY GGSCDHDPKT LENESGSGTI LKLSISKNGA GRNGNPSTDK  120
WMSSKMRMMR KMTNPDQTSS SCTSSDDKPV AMKLSISHKS EEQKPQHLDM ISCSNNSSNN  180
MNNNVPIIRV CSDCNTTKTP LWRSGPRGPK SLCNACGIRQ RKARRAMAAA AAAASGTTLA  240
AAPSMKSTSK VQHKDNKPRV ASTVPFKKRP YNKLSSTPSS KGRPPKKLCF EDFAISMNNN  300
HSSSATSTTT TSLQRVFPQD EKEAAILLMA LSCGLVHG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-26GATA family protein