PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000212.1_g1590.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HRT-like

Protein Properties

Length: 453aa MW: 50279.8 Da PI: 9.6831

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000212.1_g1590.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	58.1	1.4e-18	269	299	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv +dGsvC+++Pv+gRKRC++HKGmRi Pav_sc0000212.1_g1590.1.mk 269 ICGVDVGDGSVCRMPPVPGRKRCAKHKGMRI 299 8*****************************7 PP
2	HRT-like	55.1	1.2e-17	343	373	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+i dGs+C+++Pv+gRKRC+ HKG Ri Pav_sc0000212.1_g1590.1.mk 343 ICGFIFADGSICRTPPVPGRKRCANHKGVRI 373 8***************************997 PP
3	HRT-like	57.2	2.9e-18	417	447	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il dGs C+r+P++gRKRC eHKG+Ri Pav_sc0000212.1_g1590.1.mk 417 ICGFILADGSSCRRHPIQGRKRCDEHKGKRI 447 8*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MGAGDLTVAV TRLKREDCKR TKHDSHFSNW KILVGPSDWE DYSLGREGAE RYRVHNLPKN 60 ESPGVYELGI AVLRTGLGRE IGKLDPDYIV PVYLGQADNV RTRLQQYGRS GAHLGNGCPT 120 GHPSDRVQKG PGLFAEILSR DYPIVYRWAP MENKSVALKT ETQLLNTFDY AWNTNINGAR 180 RPDDVLQKLK IVSSSTTRFV NIAQKLVPFS SKKVGTRIES SKLLSPEDRF SAYANRESHN 240 PLSRVFKLGR SQPRLVLDRI GTTQENTTIC GVDVGDGSVC RMPPVPGRKR CAKHKGMRIN 300 RSTRVGISNS TVDSESECSA ISSIEFHDAQ IINRDTVESF TSICGFIFAD GSICRTPPVP 360 GRKRCANHKG VRINSSTRVG ISNSTVDSES ECSAISSIEF HDAQIINRDP VESFTSICGF 420 ILADGSSCRR HPIQGRKRCD EHKGKRIKNP NSY

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MGAGDLTVAV TRLKREDCKR TKHDSHFSNW KILVGPSDWE DYSLGREGAE RYRVHNLPKN  60
ESPGVYELGI AVLRTGLGRE IGKLDPDYIV PVYLGQADNV RTRLQQYGRS GAHLGNGCPT  120
GHPSDRVQKG PGLFAEILSR DYPIVYRWAP MENKSVALKT ETQLLNTFDY AWNTNINGAR  180
RPDDVLQKLK IVSSSTTRFV NIAQKLVPFS SKKVGTRIES SKLLSPEDRF SAYANRESHN  240
PLSRVFKLGR SQPRLVLDRI GTTQENTTIC GVDVGDGSVC RMPPVPGRKR CAKHKGMRIN  300
RSTRVGISNS TVDSESECSA ISSIEFHDAQ IINRDTVESF TSICGFIFAD GSICRTPPVP  360
GRKRCANHKG VRINSSTRVG ISNSTVDSES ECSAISSIEF HDAQIINRDP VESFTSICGF  420
ILADGSSCRR HPIQGRKRCD EHKGKRIKNP NSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-96	HRT-like family protein