PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000212.1_g1240.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 397aa    MW: 43641.6 Da    PI: 7.0402
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000212.1_g1240.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.2e-08141161526
                                 --SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                  C++f++ G+Ck Gd C FaHg
  Pav_sc0000212.1_g1240.1.mk 141 ACPDFRK-GHCKKGDACEFAHG 161
                                 7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MMLGEPHRPN PTVHVPPWLQ LDDPTAEVYS PFPLSGVSVN SEGNANGADY NSPYYLHEAL  60
TTFQRYLPSN ETDPDSDSDI SVRESDSPVD AYSCDHFRMF EFKVRRCARG RSHDWTECPY  120
AHPGEKARRR DPRKYHYSGT ACPDFRKGHC KKGDACEFAH GVFECWLHPA RYRTQPCKDG  180
TSCKRRVCFF AHTPEQLRVL PQQSPRGSNS LSTAESYDGS PLRQAIEAAA SCGKTLPFLS  240
STPEESPEIS PPVSPMTRSL SRSLGSNSVN EMVASLRNLQ LGKVKSLPSS WNVQVGSSGF  300
GSPGSPGFGS PRGSILRPGF CSLPSTPTRV PGRSGIGYLD FCEEGCEEEP AMERVESGRG  360
LRAKMFERLR EENSLGRVES GPSGGAPDVG WVSELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-128C3H family protein