PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000206.1_g470.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 284aa    MW: 31437 Da    PI: 6.2582
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000206.1_g470.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-20128177255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                +++GVr+++ +grW+AeIrdp+    r kr++lg+f+taeeAa  +++a+  l+g
  Pav_sc0000206.1_g470.1.mk 128 KFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTFDTAEEAATVYDRAAVLLKG 177
                                89*******.**********84....34*********************977766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    
MTSFQTISSV NPMVKFSEQV TTMTKLITHE NQNPPVNPTH LSPKLVRIIL TDADATDSSS  60
DEEDSGVRRI KRHVRQISLE LSSPSSSSSP SSSSSFSSAH SKRPRKDQRP TKKLGSRSPG  120
SDHTRRNKFR GVRRRPWGRW AAEIRDPTRR KRVWLGTFDT AEEAATVYDR AAVLLKGPDA  180
VTNFPNAAMT EATVVTDVVV PAAEESCGCG SPTPNEAATS PTSVLRYDEL TPFDGFRYGE  240
VDAFGFDIDL PLSLPDIMLS NNNNFAHDEF GEFDVNDFWV DVIC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133152RRRPWGRWAAEIRDPTRRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-28ERF family protein