PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000184.1_g110.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 786aa    MW: 91064.4 Da    PI: 7.7885
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000184.1_g110.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.89.6e-2069143189
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +fY+ YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+v+ + ++
  Pav_sc0000184.1_g110.1.mk  69 DFYSLYATRMGFRVRTGQLYRSRTDGSVSSRRFVCSKEGFQIS--------------SRTGCPALIRVQRRDSGKWVVDLFLKD 138
                                6***************************************765..............699************************ PP

                       FAR1  85 HnHel 89 
                                HnH l
  Pav_sc0000184.1_g110.1.mk 139 HNHGL 143
                                ***98 PP
2FAR166.95.3e-21223298190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                +fY+ YA+++GF++r+ +  +sk +g+it+r+fvCskeg++++              +r+gC a +++k++++g+w+v++l+++
  Pav_sc0000184.1_g110.1.mk 223 QFYHVYAENTGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHP--------------SRVGCGAFMRIKRQDSGRWVVDRLDKN 292
                                6***************************************999..............4899*********************** PP

                       FAR1  85 HnHela 90 
                                HnHel 
  Pav_sc0000184.1_g110.1.mk 293 HNHELE 298
                                ****96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    
MGMESSSTHF TIMRSSDTDS KIEDSGNNLV LKAYPMLPMK TVNAEDEGES RVLEPYVGLE  60
FDSADVARDF YSLYATRMGF RVRTGQLYRS RTDGSVSSRR FVCSKEGFQI SSRTGCPALI  120
RVQRRDSGKW VVDLFLKDHN HGLGSTEENH SPILQKKTLT RTNTVVELSH RPKIKSIEEI  180
EDLRPCPSGI ISAKRFKWDG DEMQPEVEPS AGLEFNSANE AYQFYHVYAE NTGFRIRIGQ  240
LFRSKLDGSI TSRRFVCSKE GFQHPSRVGC GAFMRIKRQD SGRWVVDRLD KNHNHELESQ  300
LEVKKTNLFS SKKFIEEEIG GLENEDIVDI NNGNHVKRRR ENHIGSDWYR VLFDYFQTKQ  360
AEDTGFFYAV EVDNGSCMSI FWADGRSRFS CCQFGDVIIL DTSYRKGIYL VPFATFIGIN  420
HHKQPVLLGC ALIADESVKS FTWLFQTWLR AMSGRCPLSI IADQDDVIQQ AIMQVFPGTH  480
HRFSLWQFKA KESEHLRLMN TSFKYEYEKC IYECQTADEF DTAWNALLSR YGLKDNGWLK  540
AMYAKRKSWV PLYLRATFFA GIPFNESIES FFGTRFNAQT PLKEFVSQYE RGLERRREEE  600
RKEDFNSFNL QAFLQTKEPL EEQCRRLYTL NIFRIFQKEL LQSYSYLGFK IYEEGATIRY  660
LVRKCGNDNE KCVVTVGPSN PKVICSCQMF EFEGVLCRHV LRVFQILDLK EVPPCYILQR  720
WTRNAEYGIP CDSESGGNPQ ELKALMVWSL REAACQYIEA GATSLEKHRL AYEIMREGGR  780
KLCWQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1 family protein