PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000175.1_g050.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family BBR-BPC
Protein Properties Length: 311aa    MW: 34933.5 Da    PI: 10.0621
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000175.1_g050.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind365.69.7e-11213111301
                  GAGA_bind   1 mdddgsre..rnkg.yye..............pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdka 66 
                                mdd  ++e  r+k  yy+              ++ ++l   +++++ms+iaerda+irern+al+ek++a+a+rd+a+ qrd+a
  Pav_sc0000175.1_g050.1.mk   1 MDDGRQHEngRHKMdYYRgaaspwnmatqqqaKEpNALV--MNKKIMSIIAERDAAIRERNAALTEKNEALAARDEALRQRDEA 82 
                                677666556899988999999999999987653345666..99***************************************** PP

                  GAGA_bind  67 laernkalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkk 150
                                la+r+ a++erdn+++al +++n+   + p g +v +g+k +++  + +   l++  + ++++++++a+pi+    ea +++++
  Pav_sc0000175.1_g050.1.mk  83 LAQRDTAMMERDNAFAALHMRDNA--VNFPLGGGVQRGAKRLHHPSN-HSVTLAEAHYSTKDMHITDAFPISIISAEAVKSRQT 163
                                ********************9998..5678899999*******8888.889***********************9999999999 PP

                  GAGA_bind 151 kkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaC 234
                                k+ +++k  +++k ++kk  +e+ +++ ++++   + k+e+++ dl+ln vs+Dest+PvPvCsCtG++rqCYkWGnGGWqS+C
  Pav_sc0000175.1_g050.1.mk 164 KRAKENKASRASKPSRKKV-GEDLNRQASSDG--IKYKSEWDTHDLGLNLVSFDESTMPVPVCSCTGVPRQCYKWGNGGWQSSC 244
                                9777777777777766665.666666666666..57************************************************ PP

                  GAGA_bind 235 CtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                                Ctt +S+yPLP+++++r+aR++grKmS+++f++lL++Laa+G+dls p+DLk++WA+HGtn+++ti+
  Pav_sc0000175.1_g050.1.mk 245 CTTHMSMYPLPQMPNKRHARMGGRKMSGSVFTRLLSRLAADGHDLSIPLDLKEYWARHGTNRYITIK 311
                                ******************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MDDGRQHENG RHKMDYYRGA ASPWNMATQQ QAKEPNALVM NKKIMSIIAE RDAAIRERNA  60
ALTEKNEALA ARDEALRQRD EALAQRDTAM MERDNAFAAL HMRDNAVNFP LGGGVQRGAK  120
RLHHPSNHSV TLAEAHYSTK DMHITDAFPI SIISAEAVKS RQTKRAKENK ASRASKPSRK  180
KVGEDLNRQA SSDGIKYKSE WDTHDLGLNL VSFDESTMPV PVCSCTGVPR QCYKWGNGGW  240
QSSCCTTHMS MYPLPQMPNK RHARMGGRKM SGSVFTRLLS RLAADGHDLS IPLDLKEYWA  300
RHGTNRYITI K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-133BBR-BPC family protein