PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000138.1_g870.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 219aa    MW: 25350.4 Da    PI: 7.2191
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000138.1_g870.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-193387256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                               ++ ++f++eq++ Le+ Fe ++++  +++ + A++lgL+ rqV +WFqNrRa++k
  Pav_sc0000138.1_g870.1.mk 33 KNQRRFSDEQIRLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWK 87
                               56789*************************************************9 PP
2HD-ZIP_I/II122.81.7e-3934125293
                HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                                ++rr+s+eq++lLE+ Fe+++kLep+rKv++areLglqprqva+WFqnrRAR+k+kq+E+d+++L++ yd+l+++ e+L++e++
  Pav_sc0000138.1_g870.1.mk  34 NQRRFSDEQIRLLESIFEADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRADYDNLASRFESLKEEKQ 117
                                68********************************************************************************** PP

                HD-ZIP_I/II  86 eLreelke 93 
                                +L  ++++
  Pav_sc0000138.1_g870.1.mk 118 SLLMQMQK 125
                                **999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MEKTECSEAE NFGSVTTSLE PHATAKRKKN KSKNQRRFSD EQIRLLESIF EADSKLEPRR  60
KVQVARELGL QPRQVAIWFQ NRRARWKSKQ IEQDFRTLRA DYDNLASRFE SLKEEKQSLL  120
MQMQKLNEVV GKPSQGLEGN IMADGSRLEE ELEPRGVIQS HKNNTSNDVG GHGDEIHELL  180
TMAHVDASSL SPQDWHRFDP SILFDPSRCT SSHWLNFWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12637KRKKNKSKNQRR
28290RRARWKSKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.12e-46HD-ZIP family protein