PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000120.1_g180.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 243aa    MW: 26492.3 Da    PI: 7.2991
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000120.1_g180.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.59e-24169217149
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
                                +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr 
  Pav_sc0000120.1_g180.1.mk 169 RCQAEGCAADLSHAKHYHRRHKVCEFHSKASTVIANGLTQRFCQQCSRV 217
                                6**********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MLDYEWGNPS TVMLSPDNDP GSDPTRHHHN TAIIFDHYAS QASAFNNLVP PPPPQQQQSH  60
NAAFAHHFNS AQAQQLHSIY DAQAYASASA YAPPNHHPLL ALDPIHGGAG HGLILVPKSE  120
DLCRPVDFAS RIGLNLGGRT YFSSEDDFMN RLYRRTRPAT ETGSTHAPRC QAEGCAADLS  180
HAKHYHRRHK VCEFHSKAST VIANGLTQRF CQQCSRVSSG VGSSFSVLCD RGPVAATNDV  240
GLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.15e-47SBP family protein