PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000107.1_g040.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 256aa MW: 28890.8 Da PI: 7.0626

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000107.1_g040.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.5	1.5e-10	85	137	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +h +Er+RR+++ + ++ Lr+ lP ++ s ++ + ++ YIk+Lq Pav_sc0000107.1_g040.1.mk 85 KKIMHRDIERQRRQEMATLYASLRSQLPLeY---LNGNRSISDHVHQTAIYIKHLQ 137 5789***********************77...9******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MDYIPSNILQ FDQALQQADE LFQISCLPYT EHTTQENQAL PPSPSQDGCD LTCRPKSGQK 60 RKASISSSNI TFGEIDDERN PKGNKKIMHR DIERQRRQEM ATLYASLRSQ LPLEYLNGNR 120 SISDHVHQTA IYIKHLQSNI QELHNKRDGL KRSCNISCSS STSTAVTMEN SQTPMKESVV 180 LVRTCKVGVE VVVNTPMKQG LTLSRLLEIL KEEGLSTISC ISAQVNEKLI YTIESEVSDG 240 KCIDMFELQQ RLTKNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	3e-44	bHLH family protein