PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G51790.1 | ||||||||
Common Name | BHLH120, EN4, MIO24.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 204aa MW: 22995.3 Da PI: 10.2398 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.2 | 6.3e-08 | 28 | 79 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+++ f+ Lr+ lP ++K ++ + Av +Ik+ q AT5G51790.1 28 KLLHRNIERQRRQEMAILFASLRSQLPLkY---IKGKRAMSDHVNGAVSFIKDTQ 79 567999**********************77...9999999***********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.11E-12 | 23 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.50E-7 | 24 | 83 | No hit | No description |
PROSITE profile | PS50888 | 11.299 | 26 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-7 | 28 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-5 | 28 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0090575 | Cellular Component | RNA polymerase II transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MNPSNNPKKT RHQSHMPQER DETKKEKKLL HRNIERQRRQ EMAILFASLR SQLPLKYIKG 60 KRAMSDHVNG AVSFIKDTQT RIKDLSARRD ELKREIGDPT SLTGSGSGSG SSRSEPASVM 120 VQPCVSGFEV VVSSLASGLE AWPLSRVLEV LHGQGLEVIS SLTARVNERL MYTIQVEVNS 180 FDCFDLAWLQ QKLIEQLVLS TTRH |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 334188325 | 0.0 | ||||
Expression Atlas | AT5G51790 | - | ||||
AtGenExpress | AT5G51790 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G51790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G51790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493789 | 0.0 | AB493789.1 Arabidopsis thaliana At5g51790 mRNA for hypothetical protein, partial cds, clone: RAAt5g51790. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001332480.1 | 1e-149 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Refseq | NP_199992.2 | 1e-150 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | ||||
Swissprot | Q9FLI0 | 1e-151 | BH120_ARATH; Transcription factor bHLH120 | ||||
TrEMBL | A0A1P8BH39 | 1e-148 | A0A1P8BH39_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | ||||
STRING | AT5G51790.1 | 1e-149 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2968 | 27 | 67 | Representative plant | OGRP1638 | 8 | 38 |
Link Out ? help Back to Top | |
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Phytozome | AT5G51790.1 |
Entrez Gene | 835253 |
iHOP | AT5G51790 |
wikigenes | AT5G51790 |