PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000103.1_g620.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family WOX
Protein Properties Length: 297aa    MW: 33866.7 Da    PI: 8.4899
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000103.1_g620.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox703e-222079357
                               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Pav_sc0000103.1_g620.1.mk 20 SRWNPTPEQLRALEELYRRgTRTPSAEQIQHITAQLrkygKIEGKNVFYWFQNHKARERQ 79
                               7*****************99**************************************97 PP
2Wus_type_Homeobox116.11.6e-371981365
          Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Pav_sc0000103.1_g620.1.mk 19 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRKYGKIEGKNVFYWFQNHKARERQKR 81
                               79***********************************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MAEQNKRSEF INTPQVVVSS RWNPTPEQLR ALEELYRRGT RTPSAEQIQH ITAQLRKYGK  60
IEGKNVFYWF QNHKARERQK RRRQMESSVP SAQPDHEISL SSTDHQKKES LAKAAVAATE  120
CRTDGWIQFD EEELQQRRNF VERNATWQMM QLSCPPPPSP LPPQYPHPPT HLIINTPTCC  180
TANSNSTNNL TSSRASRAAT VRTMDQRLIK GHDLSILLTP YSSISEESGF INFNHPNHNT  240
NVEQDHGCGE SQTLQLFPLR SGHANANANL EKDRAELSAN FSSAQAYPFF EFLPLKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-46WOX family protein