PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000102.1_g430.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 644aa MW: 72155.7 Da PI: 5.0861

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000102.1_g430.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00014	460	493	17	55
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 N+++ Lr+++P+ + ++Ka++L +++Y+k+L+ Pav_sc0000102.1_g430.1.mk 460 NEKLLVLRSMVPSiS------EVDKASVLDDTIKYLKELE 493 89999******66......8*************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MANGTQNHER VPENLRKQFA VAVRSIKWSY AIFWSLSTSQ QGVLEWCEGY YNGDIKTRKT 60 VEGVELKTDK MGLERNAQLR ELYKSLLEGE TEPQAKAPSA ALNPEDLSDA EWYYLLCMSF 120 VFNPGEGLPG RALANGQTIW LCDAQYADSK VFSRSLLAKT VVCFPYLGGV VELGVTELVP 180 EDLSLIQHIK ASLLDFSKPD CSEKSSSAPH KADDDSDQVL AKVDHEIVGT LALENLYSPS 240 EEIKFDPMGI NDLHGNHEEF NMDSPEECSN GCEHNHQTED SFMPEGINDG ASQVQSWHFM 300 DEDFSIGVQD SMNSSDCISE AFVNKKGAHS SPRHESVNRN HLKELQNFND TKFSSLDLGP 360 ADDHIHYTRT LSNILGSSIR LTKNPCSCDG GCKSSFVTWK KGVVDNCRPT VHQKILKKIL 420 FTVPLMCGAS SQNTIQDGLS KLRSDDIHKG HVMPDKLKEN EKLLVLRSMV PSISEVDKAS 480 VLDDTIKYLK ELEARAEEME SCMDTVEAIA RRKYLDRAEK TSDNYDKIKM DNVKKPWLNK 540 RKACDIDETD PDLNRLVPRE SLPLDVKVIL KEQEVLIEMR CPYREYILLD IMDAINNLYL 600 DAHSVQSSTL DGVLTLSLTS KFRGAAVAPV GMIKQALWKI AGKC

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MANGTQNHER VPENLRKQFA VAVRSIKWSY AIFWSLSTSQ QGVLEWCEGY YNGDIKTRKT  60
VEGVELKTDK MGLERNAQLR ELYKSLLEGE TEPQAKAPSA ALNPEDLSDA EWYYLLCMSF  120
VFNPGEGLPG RALANGQTIW LCDAQYADSK VFSRSLLAKT VVCFPYLGGV VELGVTELVP  180
EDLSLIQHIK ASLLDFSKPD CSEKSSSAPH KADDDSDQVL AKVDHEIVGT LALENLYSPS  240
EEIKFDPMGI NDLHGNHEEF NMDSPEECSN GCEHNHQTED SFMPEGINDG ASQVQSWHFM  300
DEDFSIGVQD SMNSSDCISE AFVNKKGAHS SPRHESVNRN HLKELQNFND TKFSSLDLGP  360
ADDHIHYTRT LSNILGSSIR LTKNPCSCDG GCKSSFVTWK KGVVDNCRPT VHQKILKKIL  420
FTVPLMCGAS SQNTIQDGLS KLRSDDIHKG HVMPDKLKEN EKLLVLRSMV PSISEVDKAS  480
VLDDTIKYLK ELEARAEEME SCMDTVEAIA RRKYLDRAEK TSDNYDKIKM DNVKKPWLNK  540
RKACDIDETD PDLNRLVPRE SLPLDVKVIL KEQEVLIEMR CPYREYILLD IMDAINNLYL  600
DAHSVQSSTL DGVLTLSLTS KFRGAAVAPV GMIKQALWKI AGKC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41315.1	1e-150	bHLH family protein