PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000099.1_g730.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family GATA
Protein Properties Length: 281aa    MW: 31421.6 Da    PI: 8.1913
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000099.1_g730.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.32.8e-20156190135
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Pav_sc0000099.1_g730.1.mk 156 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 190
                                ********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MQRCSSSSHG NMAGPCTCGV LHHTQSNSSF SMLFSMPNHH KPYDHHHHHL HETQHDHHNH  60
MYPFASSSSS VDCTLSLGTP STRLTENDVV LDDKRTRNER RSVSNFCWDL LQPKHHATSA  120
TSSHHHKNGS HRSGGNGNVV SNAVHSNNDP LLARRCANCD TTSTPLWRNG PRGPKSLCNA  180
CGIRFKKEER RATAAAANGA SSSVVGMEHN SHMLSQHHHN NSWMPHSQTQ KMPCFSPAMG  240
NEFRFMEDDT AHHENDATGI PFLSWRLNVT DRPSLVHDFT R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.13e-53GATA family protein