PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000087.1_g710.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family WOX
Protein Properties Length: 263aa    MW: 29362.6 Da    PI: 8.2931
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000087.1_g710.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.38.2e-212988357
                               --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               +R+++tkeq++ Le+++++  r+psae++++L+++l    +++ ++V++WFqN++a++++
  Pav_sc0000087.1_g710.1.mk 29 SRWNPTKEQINMLENFYRQgIRTPSAEQIQQLTSWLraygHIEGKNVFYWFQNHKARQRQ 88
                               7*****************99**************************************97 PP
2Wus_type_Homeobox108.44.3e-352890365
          Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               ++RW+Pt+eQi++Le+ y++G+rtP++e+iq++t+ L++yG+ie+kNVfyWFQN+kaR+rqkq
  Pav_sc0000087.1_g710.1.mk 28 TSRWNPTKEQINMLENFYRQGIRTPSAEQIQQLTSWLRAYGHIEGKNVFYWFQNHKARQRQKQ 90
                               79***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
IKMDGYDEQH VQGDSARASG DGAAPGSTSR WNPTKEQINM LENFYRQGIR TPSAEQIQQL  60
TSWLRAYGHI EGKNVFYWFQ NHKARQRQKQ KQESMAYLNH FFHRAAQPMF PPPSLNHHPC  120
PNVICSPYYI PVQNELGFYQ PSPYPNKVPF PGGAKRKPRT EKSVKPRTTR TGGSGYEPMP  180
HGYSTSGGGY MIDDVANEST GRCDQETLPL FPLQPTGILQ GREYQNPSCG SGTANYADNS  240
TAALIGSNSE IVGDQPFYDF FSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-57WOX family protein