PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000069.1_g070.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 576aa MW: 65260.4 Da PI: 5.5844

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000069.1_g070.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.8	3.4e-29	380	464	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rW+++ev aLi +r+++e+++++ k+p Weevs+ m + g++rs+k+Ck+kwen+nk+++k+k+++kkr + + +tc+yf+q Pav_sc0000069.1_g070.1.mk 380 RWPQSEVEALILVRSSIESKFQEPGVKGPVWEEVSALMGSMGYQRSAKRCKQKWENINKYFRKTKDSAKKR-PHNFKTCSYFNQ 462 8*******************************************************************8.88889***** PP trihelix 85 le 86 l+ Pav_sc0000069.1_g070.1.mk 463 LD 464 *8 PP

Sequence ? help Back to Top
Protein Sequence Length: 576 aa Download sequence
MQSNFDISEI GNQQHLMDIS NSCSPVLPIF NHQKQNHHHH HFNQQLEQPE PYHISQLVHP 60 TPVTHDLFQR QHLQAFQQQG RLHWQLGPVN FKLGLNENSG NGESALLGAG LFDDENGDDP 120 LLLQSRTHNL GFKSWQTHEP MCWKPLDAPI PETNRKQNEA NEGDISKDLE NKYRLYGELE 180 AIYSLAKMGE ANQTGSGSAL TGENSPKNVD LPVLFCDPHD LNVAPTAQVR VDNGSEASIG 240 EEASPRKIQK RKRKRTMKKQ LSSVISFFES LVKQVMDHQE NLHKKYLEVI ERMDKERRER 300 EAAWRSQEAE NHKREAIAKV HEQALASSRE ALIVSYIEKI TGQRVNLPSR QAPLLLQPDN 360 LNEPPVEELT PFKIDHTNSR WPQSEVEALI LVRSSIESKF QEPGVKGPVW EEVSALMGSM 420 GYQRSAKRCK QKWENINKYF RKTKDSAKKR PHNFKTCSYF NQLDQLYSGT PITAPSSSSS 480 YYSSNPSASM DDNIPKQGFS DLLEAFVAGR EAGVAHNLSS GNFQISEMGS NRLDFDGIIG 540 SKVEDVQGDL GKEKENREDD ENVDETEDTD DDDSDE

Sequence ? help Back to Top

Protein Sequence Length: 576 aa Download sequence

MQSNFDISEI GNQQHLMDIS NSCSPVLPIF NHQKQNHHHH HFNQQLEQPE PYHISQLVHP  60
TPVTHDLFQR QHLQAFQQQG RLHWQLGPVN FKLGLNENSG NGESALLGAG LFDDENGDDP  120
LLLQSRTHNL GFKSWQTHEP MCWKPLDAPI PETNRKQNEA NEGDISKDLE NKYRLYGELE  180
AIYSLAKMGE ANQTGSGSAL TGENSPKNVD LPVLFCDPHD LNVAPTAQVR VDNGSEASIG  240
EEASPRKIQK RKRKRTMKKQ LSSVISFFES LVKQVMDHQE NLHKKYLEVI ERMDKERRER  300
EAAWRSQEAE NHKREAIAKV HEQALASSRE ALIVSYIEKI TGQRVNLPSR QAPLLLQPDN  360
LNEPPVEELT PFKIDHTNSR WPQSEVEALI LVRSSIESKF QEPGVKGPVW EEVSALMGSM  420
GYQRSAKRCK QKWENINKYF RKTKDSAKKR PHNFKTCSYF NQLDQLYSGT PITAPSSSSS  480
YYSSNPSASM DDNIPKQGFS DLLEAFVAGR EAGVAHNLSS GNFQISEMGS NRLDFDGIIG  540
SKVEDVQGDL GKEKENREDD ENVDETEDTD DDDSDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	246	260	RKIQKRKRKRTMKKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	6e-49	Trihelix family protein