PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000069.1_g050.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 152aa    MW: 17749.8 Da    PI: 6.2828
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000069.1_g050.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.14.7e-191563148
                               TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT+eEd++l+++++ +G++   W++Ia +++ gRt++++k++w+++l
  Pav_sc0000069.1_g050.1.mk 15 RGSWTAEEDQKLAQVIEIHGPKrwKWSLIAGRLP-GRTDNEIKNYWNSHL 63
                               89******************99************.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MIPLSRRSTR KEVNRGSWTA EEDQKLAQVI EIHGPKRWKW SLIAGRLPGR TDNEIKNYWN  60
SHLSKKIKQR ERQNRAVSKA EQESSDTKNI QVMEVNALTI GREDASKCEE SFKSGFNGDE  120
FFDCSSDEGP LNLEWMNKFL EMDESWFTLH DI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-18MYB family protein