PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000054.1_g040.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 263aa    MW: 29202.9 Da    PI: 7.2351
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000054.1_g040.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002983105123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C++C k F ++  L  H++ H
  Pav_sc0000054.1_g040.1.mk  83 FECQYCFKEFANSQALGGHQNAH 105
                                89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MEKGQDLDQN HAHSAGSCAE KKLRLFGFEL SPSKNEDSSI KGSAEGDESV NSSNSISYGR  60
EVHMNKPASN EKSSTSEADD KKFECQYCFK EFANSQALGG HQNAHKKERM KKKRLQLQAR  120
KASINYYLQP FQTNNLGNGL AFHHGSSPSS WFYDPSSYVV NPDQFTLHEE SQISFDPFDQ  180
NGSSGSQVSN WYALPPQFSS QTDEQDASNN KFTLTQTDRS GESRPVVFKP SPLSASTQSC  240
KPLDLQLGLG LPSKIRRSSR SEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.17e-17C2H2 family protein