PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_sc0000030.1_g880.1.mk
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 848aa    MW: 93909 Da    PI: 7.4078
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_sc0000030.1_g880.1.mkgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.57e-25131232199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+ltpsd+++ g +++p+ +a+++        +++ +  tl+++d++g +W++++iyr++++r++lt+GW++Fv+ + L +g
  Pav_sc0000030.1_g880.1.mk 131 FAKILTPSDANNGGGFSVPRFCADSIfpalnyqAEPPVQ--TLSVTDLHGIVWDFRHIYRGTPRRHLLTTGWSKFVNHKMLVAG 212
                                89*********************999****985444444..9****************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D+vvF+  ++s++e++v+v+r+
  Pav_sc0000030.1_g880.1.mk 213 DSVVFM--RNSRGEMFVGVRRA 232
                                ******..669999*****996 PP
2Auxin_resp93.73e-31280363183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                aa+ a+++ +FevvY+P+a++s+Fvvk+e vekal+v +s+GmR+km++etedss+ ++ +Gt ++vs  d+  W++S+Wr+L+
  Pav_sc0000030.1_g880.1.mk 280 AAEMAAEGRPFEVVYYPKAGWSDFVVKAEVVEKALNVFWSAGMRVKMSVETEDSSRMTWfQGTLSSVSIPDNGPWQRSPWRMLQ 363
                                688999****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    
MPPTPNPPPH HHPHSHSHSP HRPIDPKIWR ACAGNSVQIP ILHSRVYYFP QGHLEQSSSS  60
TPLLLSPLVL SKPLILCRIS AVHFLSDPTT DEVFAKLLLL PIPNHERTNR HEPPNDDVFD  120
DADETDKVVS FAKILTPSDA NNGGGFSVPR FCADSIFPAL NYQAEPPVQT LSVTDLHGIV  180
WDFRHIYRGT PRRHLLTTGW SKFVNHKMLV AGDSVVFMRN SRGEMFVGVR RAVRSTVSSD  240
CASRWSSHIG GGATTTMRLK TEDQEGYGRK VMSAEAVVGA AEMAAEGRPF EVVYYPKAGW  300
SDFVVKAEVV EKALNVFWSA GMRVKMSVET EDSSRMTWFQ GTLSSVSIPD NGPWQRSPWR  360
MLQVTWDEPE VLQNAKRVSP WQVDYVASTP SIHTAFPPAK RFRVPLSPGL LTNAEEEFFF  420
PVAGAPNSTM GQLNASLLNY NTFPAGMQGA RQDLYCVSNL SHLLSENSPQ MCTYNSFGNN  480
VVPKLKRVST ELNIGSSQSD ELSPDSQSSV HSSGTELDGN RYCNSTKVGR SSFQLFGKII  540
HMNQPVEGGF DDVGCNEDNG NKGYNATEGV NNQLDLSYAK LLERLDVQYQ RASAALKAGR  600
KLTTSLTVAT NAKEDRTQSN VEASESGADQ HHLPRLRTLL KVYKEAIFNG DEETVSEVEA  660
KIEILENEKN KLVKKVSSSS AEITSGKEKF IRLQADFDNC RKRFEKERLT VRTDAQGEVI  720
ESLLPMVDNF ERAKQYIKPE TDKEKKIDAS YQGIYKQLVE TMKSLHVAVV PTVGKSFDPS  780
LHEAVAREES QEFKEGIIIQ EIRRGFLLGG RLLRPAMVKV STGPGSKKAP VATEKSSGLP  840
ATAAGVEK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-175ARF family protein