PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pav_sc0000023.1_g550.1.mk

Organism

Prunus avium

Taxonomic ID

42229

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 387aa MW: 43284.5 Da PI: 6.2449

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pav_sc0000023.1_g550.1.mk	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	3	25	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs+ L H+r H Pav_sc0000023.1_g550.1.mk 3 HRCKLCNKTFSSGKVLGGHMRGH 25 79******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MEHRCKLCNK TFSSGKVLGG HMRGHGTKNS AKAEKKLKVS NVDFEGDDDE HAGYGLRVNP 60 KKSWKFSGSK VQASEKESLC KNRIMGNRGG ISGCNDTGNK IFEFGENDSG FASDEEKTGK 120 LEVSIDRFYR GAECKRPKLD EDSAFVGYDA EIEKESHGEM EAIPTEVTEV EMDGDIIEEE 180 ELDVTKLGSI KSGIKACDSG NHMLYGTESE IFADSRKKRE HKCRTCKKLF RSHQALGGHQ 240 RVHKATNNCS GEKIEDCEDK IQINKLSKIE YSSKLAKLEC TDNSEEQEME RVTVTGFESK 300 VHRCTICLKV FATGQALGGH KRVHFGKDSE TGTEHTRALK QQISEICDAF ELSQPVKLEE 360 ENGDVEFKSW WLGNEHKLEL LVGLMPN

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MEHRCKLCNK TFSSGKVLGG HMRGHGTKNS AKAEKKLKVS NVDFEGDDDE HAGYGLRVNP  60
KKSWKFSGSK VQASEKESLC KNRIMGNRGG ISGCNDTGNK IFEFGENDSG FASDEEKTGK  120
LEVSIDRFYR GAECKRPKLD EDSAFVGYDA EIEKESHGEM EAIPTEVTEV EMDGDIIEEE  180
ELDVTKLGSI KSGIKACDSG NHMLYGTESE IFADSRKKRE HKCRTCKKLF RSHQALGGHQ  240
RVHKATNNCS GEKIEDCEDK IQINKLSKIE YSSKLAKLEC TDNSEEQEME RVTVTGFESK  300
VHRCTICLKV FATGQALGGH KRVHFGKDSE TGTEHTRALK QQISEICDAF ELSQPVKLEE  360
ENGDVEFKSW WLGNEHKLEL LVGLMPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	6e-16	C2H2 family protein