PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pav_co4052753.1_g010.1.br
Organism
Prunus avium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 320aa    MW: 36388.4 Da    PI: 8.0918
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pav_co4052753.1_g010.1.brgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.3e-151222041099
                                HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                         B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                 ++++ l +p  f+++++g      + tl+ +sg+ W v+l  +++ ++ ++ kGW +Fvk++ ++  Df++F++dg sef  +
  Pav_co4052753.1_g010.1.br 122 DFSQH-LPIPPAFIKNFNGRR--LGKCTLRGPSGKCWAVEL--EQRWDGLFFHKGWPGFVKDHFIELEDFLIFYYDGGSEF--N 198
                                55555.99******8887774..348***************..999999***************************98999..9 PP

                                EEEE-S CS
                         B3  94 vkvfrk 99 
                                v++++k
  Pav_co4052753.1_g010.1.br 199 VTIYDK 204
                                999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MLFIILKLTP YSVVLGASII QYCEQLAFPV FNNNLVVNEA GEDLKAELLN CRCILPPQSA  60
FYMEFLVFKI QPSPGCPFGF LLNSKNHLSQ RQLIIHIRFR MDKKLKSPLE RPSFRMFLVG  120
DDFSQHLPIP PAFIKNFNGR RLGKCTLRGP SGKCWAVELE QRWDGLFFHK GWPGFVKDHF  180
IELEDFLIFY YDGGSEFNVT IYDKTCCEKD VKAAAKRPAS DHLAETSTGG AILFKSENAF  240
FIQTLKSYNL YAMLIPKDIA IAEGLMSSQG ILIKETIMLQ DQTGRSCLTH LYLKPDGRLM  300
MTEGWTTCRK ANQISLGDDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-18B3 family protein