PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PON79735.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28789.8 Da PI: 7.8446 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.2 | 7.8e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+E+SvLCdaevavi+fs++gkl+eys+ PON79735.1 9 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAVIVFSHKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 94.9 | 1.3e-31 | 85 | 176 | 9 | 100 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e++ + +++ e+++L ++ie Lqr+ Rh+lGedL+sL+lk+Lq+LeqqL+ slk+iR++Kn+l+ e ++ qkkekel++en L+kk++e PON79735.1 85 SEAHLQGNWTVEYSRLTAKIELLQRNRRHYLGEDLDSLNLKDLQSLEQQLDASLKEIRARKNKLMNETLSAYQKKEKELRDENSLLEKKIKE 176 44445679*********************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRNGLLK KAHEISVLCD AEVAVIVFSH KGKLFEYSTD 60 SCMEKILERY ERYSYAERQL VTMDSEAHLQ GNWTVEYSRL TAKIELLQRN RRHYLGEDLD 120 SLNLKDLQSL EQQLDASLKE IRARKNKLMN ETLSAYQKKE KELRDENSLL EKKIKEKEKN 180 VAQVEQMHWE QQNHCPNTSS FMLPQPLPCL NIGGSYEQET LELRRNDLDL TLEPLYPCHL 240 GCFDS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26310.1 | 1e-106 | MIKC_MADS family protein |