PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON74145.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

HB-PHD

Protein Properties

Length: 704aa MW: 79870.6 Da PI: 9.2206

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON74145.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34.1	4.6e-11	484	525	12	53
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +e+L e+F +n ps++ +e L+k+lgL+ ++V+ WF+N R+ PON74145.1 484 VERLREVFTENELPSRDVKENLSKELGLDSEKVSKWFKNARY 525 789*************************************97 PP
2	PHD	39.9	9.8e-14	239	293	1	50
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 +C+ C+ + +++++lCd +C+++fH+kCl+++l++e++p g w+C+ C++ PON74145.1 239 FCAKCKLreEFPDNDIILCDgTCNSAFHQKCLDPPLDTESIPPGdqGWFCRFCEC 293 699999854445******56****************9999*****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 704 aa Download sequence
MPGTGKKLCS QESGKSCYSN TETEPKLIAP LKSKKGSKVS HGKNQKLKLK SHIKESGSTL 60 TKKKDTEFLN RETENNTTLR NLIGKKLLHK KKLGTKSSSQ LSSLKLQGEK VRPSGEKIEV 120 NANGDVNIEK VKTRRRRKRK KVNVELDEPS RLQRRTRYLL IKIKLEQNLI DAYSGEGWKG 180 QSREKIKPEK ELQRAKKQIL KCKLGIRDAV RQLDSLSSVG SIEDSVMAPD GSVYHEHIFC 240 AKCKLREEFP DNDIILCDGT CNSAFHQKCL DPPLDTESIP PGDQGWFCRF CECRMEILEV 300 VNAHIGTHFS MNNSWEDVFE EEAALPEDGN ASLHPDDEWP SDDSEDDDYN PERRENSCSI 360 GGAGTDDNES EDEFSFTSSI GSDESMDAEI VYGRRQRREV DYRKLYDEMF GKDAPPYEQM 420 SEDEDWGPAK RKRREKESDA ASTLMTLHES EKVCSDVDVQ EVKRKLPTDT QIRRSFFRIP 480 RVAVERLREV FTENELPSRD VKENLSKELG LDSEKVSKWF KNARYLALKT RKAESAKQLD 540 TATSGISKDS GFENVMKEGG YLIMSDNTST ETVVHVIKNP KKPCQRKRPK SLSSPLKVKH 600 RKKSSLMSPA KSKKESLELS DDVTLKKLLK GRTKEKKRVN ILAGVGCADA EAEMERLCKI 660 KGRLESIKQK LLKYQNNKAN NSDKLTLNGP SVIYVPVAEL REKA

Sequence ? help Back to Top

Protein Sequence Length: 704 aa Download sequence

MPGTGKKLCS QESGKSCYSN TETEPKLIAP LKSKKGSKVS HGKNQKLKLK SHIKESGSTL  60
TKKKDTEFLN RETENNTTLR NLIGKKLLHK KKLGTKSSSQ LSSLKLQGEK VRPSGEKIEV  120
NANGDVNIEK VKTRRRRKRK KVNVELDEPS RLQRRTRYLL IKIKLEQNLI DAYSGEGWKG  180
QSREKIKPEK ELQRAKKQIL KCKLGIRDAV RQLDSLSSVG SIEDSVMAPD GSVYHEHIFC  240
AKCKLREEFP DNDIILCDGT CNSAFHQKCL DPPLDTESIP PGDQGWFCRF CECRMEILEV  300
VNAHIGTHFS MNNSWEDVFE EEAALPEDGN ASLHPDDEWP SDDSEDDDYN PERRENSCSI  360
GGAGTDDNES EDEFSFTSSI GSDESMDAEI VYGRRQRREV DYRKLYDEMF GKDAPPYEQM  420
SEDEDWGPAK RKRREKESDA ASTLMTLHES EKVCSDVDVQ EVKRKLPTDT QIRRSFFRIP  480
RVAVERLREV FTENELPSRD VKENLSKELG LDSEKVSKWF KNARYLALKT RKAESAKQLD  540
TATSGISKDS GFENVMKEGG YLIMSDNTST ETVVHVIKNP KKPCQRKRPK SLSSPLKVKH  600
RKKSSLMSPA KSKKESLELS DDVTLKKLLK GRTKEKKRVN ILAGVGCADA EAEMERLCKI  660
KGRLESIKQK LLKYQNNKAN NSDKLTLNGP SVIYVPVAEL REKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	141	KVKTRRRRKRKK
2	134	140	RRRRKRK
3	134	164	RRRRKRKKVNVELDEPSRLQRRTRYLLIKIK
4	135	142	RRRKRKKV
5	135	141	RRRRKRK
6	135	165	RRRRKRKKVNVELDEPSRLQRRTRYLLIKIK
7	136	166	RRRRKRKKVNVELDEPSRLQRRTRYLLIKIK
8	137	141	RKRKK
9	137	167	RRRRKRKKVNVELDEPSRLQRRTRYLLIKIK
10	138	168	RRRRKRKKVNVELDEPSRLQRRTRYLLIKIK
11	431	436	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-163	HB-PHD family protein