PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON70563.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 1383aa MW: 151476 Da PI: 7.9561

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON70563.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	8e-07	554	577	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C +f+r G C++G++C+++H++ PON70563.1 554 VPECFDFLR-GRCNRGASCRYMHPE 577 578999*.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1383 aa Download sequence
MGNCHVSSVA PPPPPPSSPP PIPPSPPKSA SSPFSISRPR VHGSGDNVIA TNLVGDNASM 60 HDNSQNLEGG SFCEVGSLPR NVPVVAGNEM LNLSPPPSKP TEAKTIQRIE DLCQLIAKNG 120 PGVEDVTRQK EYGNPEYEFL LGGEPGSEAA IGHEYFLWLK NKCLLTTKSH EGHREPAFMP 180 LQVGSLTQPE PLMASAGFTL SDDSDMEMED DITISDKDRE MNQSTGALLT VKELDDKEQL 240 QSEGLTSKSA SKVHSQVMYS VGGAECLLDS HLEKSVSPLA DNLSASCASV AVEANNSEKC 300 SELIKGGSPI RLLQDYASDG SSEDDDQLLH EGLNPSTVLP SFIAGASSHN KDTGSCIGKD 360 PGSKSRHCLR KDEKGSGQLS DSQGEVKDAG IAFIATVRAD ECLDNNPGNK SFAIDATSHV 420 DFQRKVTLDC ADAHVISKRG KTKENEEKKE KSESASLKVD EFGRLVREGS IDSESDSGYT 480 DRHVRRGKRG RSRSRSRSPL DRRRTRRSLR RRKEKRSRSR SRSPRNQRSR SRSPSYRRAD 540 EFGGEKLRSD RGRVPECFDF LRGRCNRGAS CRYMHPEVDK SNSSRRYRSK QKYREVPSST 600 KNYKTNKETK KSHEEHVSDE AQIQGMKGGK VDWRRKDIVM DSQQSVTLDR GSWLIDSSMV 660 KYHSPGEVTG TVQEKQIIRE KSAEPNPQVP DNKTSLEESD QKPSVDVFPS HYVGGTNILN 720 SHGDTTPDML PLVKSTVIHQ PQSNTSVAEV QNTDFPCHQM DDSSVSDASP DQTSLASSPK 780 KFSKSELFPN NVLPAQSLPN ASSCQEHSSE PAALPYPSPK VLSSPTYSGP TIPQQYSQLP 840 PPPPPAATQS TNAPHMRQLP MDYSLMPQVA SYALQSAHAR NLHAYHQASL ANQHPQLSVP 900 PSSSWTSLPP PPPRPSYDLR FNTETATPGV SSQFQHSPFP PRNDLCSQIS VRLSPSELHS 960 NSQFSEFLHQ AYPLMQEFQR PKLENSGSGK PISPFVAASL FREDHITHQD FNTSLGHGSL 1020 HQTPLPSQEL AVNKMLPISS DLPSGELVKS TSQIHPFSHR QQAASHLQYP LGDSSAGMPG 1080 KAGSTSQYPL DLLDRNRSSD PDFGVSRISA HYNPYASTFE QPLSSKFRSS AFGHDKGVVC 1140 GNQYDTPFSL SYAAVDGQGV GSFGSRQTTS SPSSARAVGQ ILPRASGDQY DPLFDSVEPS 1200 SNAKRKVRQR RKWEPATDSD PKEKHSGSQK PLDLEENNRH EVAAVASITS MNNDEFGETA 1260 DAEVGAVENE SPSNLVGLAT TGEIETERKS SGKKKKKDSK SSKHFKTAIA DFVKDVLKPS 1320 WRQGNMSKEA FKTIVKKTVD KVSGAMKGHQ IPKSQAKIDH YIDSSQRKLT RLVMGYVDKY 1380 VKV

Sequence ? help Back to Top

Protein Sequence Length: 1383 aa Download sequence

MGNCHVSSVA PPPPPPSSPP PIPPSPPKSA SSPFSISRPR VHGSGDNVIA TNLVGDNASM  60
HDNSQNLEGG SFCEVGSLPR NVPVVAGNEM LNLSPPPSKP TEAKTIQRIE DLCQLIAKNG  120
PGVEDVTRQK EYGNPEYEFL LGGEPGSEAA IGHEYFLWLK NKCLLTTKSH EGHREPAFMP  180
LQVGSLTQPE PLMASAGFTL SDDSDMEMED DITISDKDRE MNQSTGALLT VKELDDKEQL  240
QSEGLTSKSA SKVHSQVMYS VGGAECLLDS HLEKSVSPLA DNLSASCASV AVEANNSEKC  300
SELIKGGSPI RLLQDYASDG SSEDDDQLLH EGLNPSTVLP SFIAGASSHN KDTGSCIGKD  360
PGSKSRHCLR KDEKGSGQLS DSQGEVKDAG IAFIATVRAD ECLDNNPGNK SFAIDATSHV  420
DFQRKVTLDC ADAHVISKRG KTKENEEKKE KSESASLKVD EFGRLVREGS IDSESDSGYT  480
DRHVRRGKRG RSRSRSRSPL DRRRTRRSLR RRKEKRSRSR SRSPRNQRSR SRSPSYRRAD  540
EFGGEKLRSD RGRVPECFDF LRGRCNRGAS CRYMHPEVDK SNSSRRYRSK QKYREVPSST  600
KNYKTNKETK KSHEEHVSDE AQIQGMKGGK VDWRRKDIVM DSQQSVTLDR GSWLIDSSMV  660
KYHSPGEVTG TVQEKQIIRE KSAEPNPQVP DNKTSLEESD QKPSVDVFPS HYVGGTNILN  720
SHGDTTPDML PLVKSTVIHQ PQSNTSVAEV QNTDFPCHQM DDSSVSDASP DQTSLASSPK  780
KFSKSELFPN NVLPAQSLPN ASSCQEHSSE PAALPYPSPK VLSSPTYSGP TIPQQYSQLP  840
PPPPPAATQS TNAPHMRQLP MDYSLMPQVA SYALQSAHAR NLHAYHQASL ANQHPQLSVP  900
PSSSWTSLPP PPPRPSYDLR FNTETATPGV SSQFQHSPFP PRNDLCSQIS VRLSPSELHS  960
NSQFSEFLHQ AYPLMQEFQR PKLENSGSGK PISPFVAASL FREDHITHQD FNTSLGHGSL  1020
HQTPLPSQEL AVNKMLPISS DLPSGELVKS TSQIHPFSHR QQAASHLQYP LGDSSAGMPG  1080
KAGSTSQYPL DLLDRNRSSD PDFGVSRISA HYNPYASTFE QPLSSKFRSS AFGHDKGVVC  1140
GNQYDTPFSL SYAAVDGQGV GSFGSRQTTS SPSSARAVGQ ILPRASGDQY DPLFDSVEPS  1200
SNAKRKVRQR RKWEPATDSD PKEKHSGSQK PLDLEENNRH EVAAVASITS MNNDEFGETA  1260
DAEVGAVENE SPSNLVGLAT TGEIETERKS SGKKKKKDSK SSKHFKTAIA DFVKDVLKPS  1320
WRQGNMSKEA FKTIVKKTVD KVSGAMKGHQ IPKSQAKIDH YIDSSQRKLT RLVMGYVDKY  1380
VKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	489	497	RGRSRSRSR
2	510	515	RRRKEK
3	515	520	KRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-15	C3H family protein