PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON66612.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 862aa MW: 102192 Da PI: 6.9273

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON66612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.8e-06	205	224	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H PON66612.1 205 CPFHLKTGACRFGQRCSRVH 224 ******************99 PP
2	zf-CCCH	25.9	1.7e-08	334	361	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++ tC++G C+F+H+ PON66612.1 334 WKVAICGEYMKSRfkTCSRGTACNFIHC 361 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 862 aa Download sequence
MENGMNRKEK RKALKKMKRK QTRKELAVKE REEEEARLND PEEQKRISLM EQVEAERSER 60 ERKEFEEREK AWLEDMELKK KKMMEEEEEN RRKAMEEESR KLQVENENED NESDEWEYEE 120 GPAEIIWQGN EIIFKKKKIR FSKKKKELDE LSEKEDANRP TSNPLPPESE AFAEYRNSLI 180 SGQHLIENVA EQVPNFGTEQ DKTHCPFHLK TGACRFGQRC SRVHFYPDKS CTLLIKNMYS 240 GPGLAWEQDE GLEYTDEEVE RCYEEFYEDV HTEFLKYGEI VNFKVCRNGS FHLRGNVYVH 300 FKSLDSAVLA HQFVNGRYFA GKQVRCEFVN VTRWKVAICG EYMKSRFKTC SRGTACNFIH 360 CFRNPCGDYE WADSDRPPPT YWVKKMVALF GYSDESAFEG LREQENFDQP DSSGERSTAE 420 ANRYCSRRSR SRETSYRRHT CSDRRTDNEA YDLRRADQLR CTNNNKEPGK RVDEDMREEH 480 IDLEDKRHRK RKTPLTDSDG ELFDDDREIC ENEFHYYSRE SSRWRSRDDK RKTNEYGSDG 540 DWLTREGEGE RHHSHTRKSS KYHRKARKLD DYGDHKSHKV DGDGRDKCRD RETYHDSRKK 600 SSRHSRKAGY AGYHGDSKHR SHNTDRGWSD KDSHCDELLE KGEARHRLRC RGQLNEVSDF 660 SNDQREPAKC LEDQGDHSNR DIRKAYSCNE NLRLGRSHDS SSSSHYDEGY RSHDLHLRYS 720 SDVQMDKQDR WESEVYSDKK PHKSGTATSS SSPGRYNGRG KSCDYDIYHY YEKAHEENPS 780 ESEEVIPKHQ KSQRKSDTNH YEQYSGKIET ESRSISSGKL SHGRCLNSSE ERDFHEDDKE 840 LRRHRKKNWS HPSSDDHKKH GE

Sequence ? help Back to Top

Protein Sequence Length: 862 aa Download sequence

MENGMNRKEK RKALKKMKRK QTRKELAVKE REEEEARLND PEEQKRISLM EQVEAERSER  60
ERKEFEEREK AWLEDMELKK KKMMEEEEEN RRKAMEEESR KLQVENENED NESDEWEYEE  120
GPAEIIWQGN EIIFKKKKIR FSKKKKELDE LSEKEDANRP TSNPLPPESE AFAEYRNSLI  180
SGQHLIENVA EQVPNFGTEQ DKTHCPFHLK TGACRFGQRC SRVHFYPDKS CTLLIKNMYS  240
GPGLAWEQDE GLEYTDEEVE RCYEEFYEDV HTEFLKYGEI VNFKVCRNGS FHLRGNVYVH  300
FKSLDSAVLA HQFVNGRYFA GKQVRCEFVN VTRWKVAICG EYMKSRFKTC SRGTACNFIH  360
CFRNPCGDYE WADSDRPPPT YWVKKMVALF GYSDESAFEG LREQENFDQP DSSGERSTAE  420
ANRYCSRRSR SRETSYRRHT CSDRRTDNEA YDLRRADQLR CTNNNKEPGK RVDEDMREEH  480
IDLEDKRHRK RKTPLTDSDG ELFDDDREIC ENEFHYYSRE SSRWRSRDDK RKTNEYGSDG  540
DWLTREGEGE RHHSHTRKSS KYHRKARKLD DYGDHKSHKV DGDGRDKCRD RETYHDSRKK  600
SSRHSRKAGY AGYHGDSKHR SHNTDRGWSD KDSHCDELLE KGEARHRLRC RGQLNEVSDF  660
SNDQREPAKC LEDQGDHSNR DIRKAYSCNE NLRLGRSHDS SSSSHYDEGY RSHDLHLRYS  720
SDVQMDKQDR WESEVYSDKK PHKSGTATSS SSPGRYNGRG KSCDYDIYHY YEKAHEENPS  780
ESEEVIPKHQ KSQRKSDTNH YEQYSGKIET ESRSISSGKL SHGRCLNSSE ERDFHEDDKE  840
LRRHRKKNWS HPSSDDHKKH GE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	587	600	KCRDRETYHDSRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-141	C3H family protein