PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON59056.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

C3H

Protein Properties

Length: 623aa MW: 68703.2 Da PI: 7.1767

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON59056.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19	2.5e-06	309	329	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++ C++Gd+C +aHg PON59056.1 309 PCPDHRK-AKCRRGDSCEYAHG 329 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MCGGPEQFNS KTRQESESES ESFNSKTRQE SESESESESD AKAMNNPNET DVLLELAADD 60 DVERFKQCIN DGCLINEAGL WYCRQRAAKR MAFMGRTPLM VAAMNGSLEV VKLILSMPQA 120 DINRSCDPDK STALHCAASS GTISAIEVVK LLLLAGADIN ATDCNGHRPF DVIVSPPNLA 180 NLKVALAEVL KSDGSACQSS SIPRSPSLQS SPEKGSSSSL FDSTTLPPTY EPNDLHISPA 240 SKKKQYPIDP SIPDIKNSIY STDEFRMFSF KIRPCSRTYS HDWKECPFVH PGENARRRDP 300 KKFHYSCVPC PDHRKAKCRR GDSCEYAHGV FESLLHPAQY RTQICKDSTS CPRRVCFFAH 360 TTEELRPLYQ STGSAVPSHR SATSAATAID IAPALNLLPG SPSVPILMPP SNGISKASMP 420 WPQQKIPTLQ LPGSHLQMSR LRSFNARNVP VESFQLQQKR PSMPSDLNEL FSSKVISPRY 480 SLFSPSQNPA LFNKLQLQDS MLSPVKTNSF SPTNFEHASL GDFLPGMMSS QGIEHQFPFS 540 SGVYALGKSE NQQQQLRSFG SRDLGSRSLP FHDTRVLDLS LVQSLVKQSP SDINETTRFS 600 VSDATHSGEY SNLRPLDQTG SEF

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MCGGPEQFNS KTRQESESES ESFNSKTRQE SESESESESD AKAMNNPNET DVLLELAADD  60
DVERFKQCIN DGCLINEAGL WYCRQRAAKR MAFMGRTPLM VAAMNGSLEV VKLILSMPQA  120
DINRSCDPDK STALHCAASS GTISAIEVVK LLLLAGADIN ATDCNGHRPF DVIVSPPNLA  180
NLKVALAEVL KSDGSACQSS SIPRSPSLQS SPEKGSSSSL FDSTTLPPTY EPNDLHISPA  240
SKKKQYPIDP SIPDIKNSIY STDEFRMFSF KIRPCSRTYS HDWKECPFVH PGENARRRDP  300
KKFHYSCVPC PDHRKAKCRR GDSCEYAHGV FESLLHPAQY RTQICKDSTS CPRRVCFFAH  360
TTEELRPLYQ STGSAVPSHR SATSAATAID IAPALNLLPG SPSVPILMPP SNGISKASMP  420
WPQQKIPTLQ LPGSHLQMSR LRSFNARNVP VESFQLQQKR PSMPSDLNEL FSSKVISPRY  480
SLFSPSQNPA LFNKLQLQDS MLSPVKTNSF SPTNFEHASL GDFLPGMMSS QGIEHQFPFS  540
SGVYALGKSE NQQQQLRSFG SRDLGSRSLP FHDTRVLDLS LVQSLVKQSP SDINETTRFS  600
VSDATHSGEY SNLRPLDQTG SEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	1e-165	C3H family protein