PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G12850.1 | ||||||||
Common Name | T24H18.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 706aa MW: 77775.3 Da PI: 6.9463 | ||||||||
Description | CCCH-type zinc finger protein with ARM repeat domain | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.5 | 7.3e-06 | 302 | 322 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + G Ck Gd C +aHg AT5G12850.1 302 PCPDFKK-GSCKQGDMCEYAHG 322 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 1.2E-16 | 40 | 184 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 3.58E-16 | 42 | 176 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.016 | 83 | 176 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 5.7E-10 | 83 | 152 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.17 | 83 | 113 | IPR002110 | Ankyrin repeat |
CDD | cd00204 | 4.81E-14 | 85 | 161 | No hit | No description |
PROSITE profile | PS50088 | 11.461 | 118 | 153 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 5.8E-5 | 118 | 150 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.2E-4 | 297 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.8E-4 | 302 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.915 | 302 | 324 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-4 | 330 | 360 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.831 | 332 | 356 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MCGLAKKLDI EDTLTSLSDQ ENESLAKPMN DAAEWEHSFS ALLEFAADND VEGFRRQLSD 60 VSCINQMGLW YRRQRFVRRM VLEQRTPLMV ASLYGSLDVV KFILSFPEAE LNLSCGPDKS 120 TALHCAASGA SVNSLDVVKL LLSVGADPNI PDAHGNRPVD VLVVSPHAPG LRTILEEILK 180 KDEIISEDLH ASSSSLGSSF RSLSSSPDNG SSLLSLDSVS SPTKPHGTDV TFASEKKEYP 240 IDPSLPDIKS GIYSTDEFRM FSFKIRPCSR AYSHDWTECP FAHPGENARR RDPRKFHYTC 300 VPCPDFKKGS CKQGDMCEYA HGVFECWLHP AQYRTRLCKD GMGCNRRVCF FAHANEELRP 360 LYPSTGSGLP SPRASSAVSA STMDMASVLN MLPGSPSAAQ HSFTPPISPS GNGSMPHSSM 420 GWPQQNIPAL NLPGSNIQLS RLRSSLNARD IPSEQLSMLH EFEMQRQLAG DMHSPRFMNH 480 SARPKTLNPS NLEELFSAEV ASPRFSDQLA VSSVLSPSHK SALLNQLQNN KQSMLSPIKT 540 NLMSSPKNVE QHSLLQQASS PRGGEPISPM NARMKQQLHS RSLSSRDFGS SLPRDLMPTD 600 SGSPLSPWSS WDQTHGSKVD WSVQSDELGR LRKSHSLANN PNREADVSWA QQMLKDSSSP 660 RNGNRVVNMN GARPLTQGGS SVNPHNSDTR ESDILDAWLE QLHLDR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.5281 | 0.0 | flower| root| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145357945 | 0.0 | ||||
Genevisible | 250321_at | 0.0 | ||||
Expression Atlas | AT5G12850 | - | ||||
AtGenExpress | AT5G12850 | - | ||||
ATTED-II | AT5G12850 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G12850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G12850 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227145 | 0.0 | AK227145.1 Arabidopsis thaliana mRNA for zinc finger transcription factor -like protein, complete cds, clone: RAFL09-83-N23. | |||
GenBank | AL353013 | 0.0 | AL353013.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project). | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_196789.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain-containing protein | ||||
Swissprot | Q9LXV4 | 0.0 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A178UHK2 | 0.0 | A0A178UHK2_ARATH; Uncharacterized protein | ||||
STRING | AT5G12850.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1785 | 28 | 79 | Representative plant | OGRP709 | 15 | 69 |
Link Out ? help Back to Top | |
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Phytozome | AT5G12850.1 |
Entrez Gene | 831125 |
iHOP | AT5G12850 |
wikigenes | AT5G12850 |