PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON53313.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

Trihelix

Protein Properties

Length: 350aa MW: 38439.6 Da PI: 10.1948

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON53313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.5	2.3e-15	52	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L+ea+++++ +r+klk+++We+v++++ ++ ++++qCk+k+e+++kry+ + + + + ++p++++l+ PON53313.1 52 EWSEGAVSSLLEAYESKWVLRNRAKLKGHDWEDVARYVssraNCTKSPKTQTQCKNKIESMKKRYRSESTADAS-------SWPLYSRLD 134 5***********************************854444555566679***********99988876.......489888886 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MDKETNNKEN PSLLPNNTTA TAAAIIVPKE ESPRKPLSGG GAGTGDRLKR DEWSEGAVSS 60 LLEAYESKWV LRNRAKLKGH DWEDVARYVS SRANCTKSPK TQTQCKNKIE SMKKRYRSES 120 TADASSWPLY SRLDLLLRGN GEPAAAAVAV TVAASAQTQP MPPSLPPSNN TPLMLLEPTP 180 VAVAPLLPPP GPGPPPQNSH GSNGVERIAK EDGTMNKILS DHASDRNNSM DITSDSSTPA 240 LYSEKAEKMR SSSRKANKIM KKKKRKRKEE FEVAESIRWL AEAVVKSEQT RMEAMREIER 300 MRVEAEAKRA EMELKRTEII ANTQLEIAKL FASAGHVGKA VDSSLRIGRN

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MDKETNNKEN PSLLPNNTTA TAAAIIVPKE ESPRKPLSGG GAGTGDRLKR DEWSEGAVSS  60
LLEAYESKWV LRNRAKLKGH DWEDVARYVS SRANCTKSPK TQTQCKNKIE SMKKRYRSES  120
TADASSWPLY SRLDLLLRGN GEPAAAAVAV TVAASAQTQP MPPSLPPSNN TPLMLLEPTP  180
VAVAPLLPPP GPGPPPQNSH GSNGVERIAK EDGTMNKILS DHASDRNNSM DITSDSSTPA  240
LYSEKAEKMR SSSRKANKIM KKKKRKRKEE FEVAESIRWL AEAVVKSEQT RMEAMREIER  300
MRVEAEAKRA EMELKRTEII ANTQLEIAKL FASAGHVGKA VDSSLRIGRN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	267	RKANKIMKKKKRKR
2	261	266	KKKKRK
3	261	267	KKKKRKR
4	262	268	KKKKRKR
5	263	268	KKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	2e-77	Trihelix family protein