PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PON41447.1

Organism

Parasponia andersonii

Taxonomic ID

3476

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Parasponia

Family

HD-ZIP

Protein Properties

Length: 359aa MW: 40030.1 Da PI: 4.7768

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PON41447.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.6e-19	56	109	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k PON41447.1 56 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 109 566899***********************************************9 PP
2	HD-ZIP_I/II	129.2	1.6e-41	55	147	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++ydalk + ++L++++e+L +e++e PON41447.1 55 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYSLLKANYDALKLNYDALKHDNEALLKEIRE 147 69*************************************************************************************999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MKRLSSSESL GALMSVCPTT EEHSPSSHVY GRDFRSMLDG LDEEGCVEES GHVSEKKRRL 60 SVDQVKALEK NFEVENKLEP ERKVKLAQEL GLQPRQVAVW FQNRRARWKT KQLERDYSLL 120 KANYDALKLN YDALKHDNEA LLKEIRELKS KLQDENSESN LSVKEELIMG PTESDNKLTW 180 IDAAAAAAAA APPPPPDHNH HLPPSEESKV LNYDEGLNDT NNGVVLEVVS MFPDFKDGAS 240 DSDSSAILNE DVHNHHSNNN SNSPNNNGAI SSTGVLQNLM MSSPSSPPAP STSLTFNGSS 300 SSSRLSSSSL NCFQFQKAAP FQPQFVKIEE HNFFAEEACN FFNDDQAPTL QWYCSDQWN

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MKRLSSSESL GALMSVCPTT EEHSPSSHVY GRDFRSMLDG LDEEGCVEES GHVSEKKRRL  60
SVDQVKALEK NFEVENKLEP ERKVKLAQEL GLQPRQVAVW FQNRRARWKT KQLERDYSLL  120
KANYDALKLN YDALKHDNEA LLKEIRELKS KLQDENSESN LSVKEELIMG PTESDNKLTW  180
IDAAAAAAAA APPPPPDHNH HLPPSEESKV LNYDEGLNDT NNGVVLEVVS MFPDFKDGAS  240
DSDSSAILNE DVHNHHSNNN SNSPNNNGAI SSTGVLQNLM MSSPSSPPAP STSLTFNGSS  300
SSSRLSSSSL NCFQFQKAAP FQPQFVKIEE HNFFAEEACN FFNDDQAPTL QWYCSDQWN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	56	85	KKRRLSVDQVKALEKNFEVENKLEPERKVK
2	104	112	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	5e-67	HD-ZIP family protein